Related papers: Transposition diameter on circular binary strings
Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time…
We generalize the exact field theoretic correspondence proposed in arXiv:1103.5726 and embed it into the context of refined topological string. The correspondence originally proposed from the common integrable structures in different field…
For a given permutation or set partition there is a natural way to assign a genus. Counting all permutations or partitions of a fixed genus according to cycle lengths or block sizes, respectively, is the main content of this article. After…
The ribosome flow model on a ring (RFMR) is a deterministic model for translation of a circularized mRNA. We derive a new spectral representation for the optimal steady-state production rate and the corresponding optimal steady-state…
In this paper we prove new lower bounds for the maximal size of permutation codes by connecting the theory of permutation codes with the theory of linear block codes. More specifically, using the columns of a parity check matrix of an…
We address the maximum size of binary codes and binary constant weight codes with few distances. Previous works established a number of bounds for these quantities as well as the exact values for a range of small code lengths. As our main…
We extend earlier ideas about the appearance of noncommutative geometry in string theory with a nonzero B-field. We identify a limit in which the entire string dynamics is described by a minimally coupled (supersymmetric) gauge theory on a…
In this short note, we show a simple characterization of integers that reach records for a sequence described by adding binary strings to runs of 1's and 0's in a binary representation. In particular, we show that this set does not depend…
We analyze reversibility of both displacements and rotations of spherical grains in three-dimensional compression experiments. Using transparent acrylic beads with cylindrical holes and index matching techniques, we are not only capable of…
A permutation array $A$ is a set of permutations on a finite set $\Omega$, say of size $n$. Given distinct permutations $\pi, \sigma\in \Omega$, we let $hd(\pi, \sigma) = |\{ x\in \Omega: \pi(x) \ne \sigma(x) \}|$, called the Hamming…
Genome rearrangements are events where large blocks of DNA exchange places during evolution. The analysis of these events is a promising tool for understanding evolutionary genomics, providing data for phylogenetic reconstruction based on…
We investigate the minimum distance of structured binary Low-Density Parity-Check (LDPC) codes whose parity-check matrices are of the form $[\mathbf{C} \vert \mathbf{M}]$ where $\mathbf{C}$ is circulant and of column weight $2$, and…
If the list of binary numbers is read by upward-sloping diagonals, the resulting ``sloping binary numbers'' 0, 11, 110, 101, 100, 1111, 1010, ... (or 0, 3, 6, 5, 4, 15, 10, ...) have some surprising properties. We give formulae for the n-th…
The reconstruction problem for permutations on $n$ elements from their erroneous patterns which are distorted by transpositions is presented in this paper. It is shown that for any $n \geq 3$ an unknown permutation is uniquely…
A lazy transposition $(a,b,p)$ is the random permutation that equals the identity with probability $1-p$ and the transposition $(a,b)\in S_n$ with probability $p$. How long must a sequence of independent lazy transpositions be if their…
There exists a large literature of construction of convolutional codes with maximal or near maximal free distance. Much less is known about constructions of convolutional codes having optimal or near optimal column distances. In this paper,…
The size of rings (also called cyclic polymers) in bidisperse blends of chemically identical rings is analyzed by computer simulations. Data of entangled ring blends and blends of interpenetrating rings are compared and it is shown that the…
Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…
The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…
It is known that the majority of the human genome consists of repeated sequences. Furthermore, it is believed that a significant part of the rest of the genome also originated from repeated sequences and has mutated to its current form. In…