Related papers: Transposition diameter on circular binary strings
A translation surface is a surface formed by identifying edges of a collection of polygons in the complex plane that are parallel and of equal length using only translations. We determined that the same circle packing can be realized on…
Dihedral codes, particular cases of quasi-cyclic codes, have a nice algebraic structure which allows to store them efficiently. In this paper, we investigate it and prove some lower bounds on their dimension and minimum distance, in analogy…
We design a heuristic method, a genetic algorithm, for the computation of an upper bound of the minimum distance of a linear code over a finite field. By the use of the row reduced echelon form, we obtain a permutation encoding of the…
The square $C^{*2}$ of a linear error correcting code $C$ is the linear code spanned by the component-wise products of every pair of (non-necessarily distinct) words in $C$. Squares of codes have gained attention for several applications…
Computing the reversal distances of signed permutations is an important topic in Bioinformatics. Recently, a new lower bound for the reversal distance was obtained via the plane permutation framework. This lower bound appears different from…
Rotation distance between trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. In the case of ordered rooted trees, we…
Compositions of tree-walking tree transducers form a hierarchy with respect to the number of transducers in the composition. As main technical result it is proved that any such composition can be realized as a linear bounded composition,…
New lower bounds on the minimum average Hamming distance of binary codes are derived. The bounds are obtained using linear programming approach.
It is shown that metric representation of DNA sequences is one-to-one. By using the metric representation method, suppression of nucleotide strings in the DNA sequences is determined. For a DNA sequence, an optimal string length to display…
The inverse degree of a graph is the sum of the reciprocals of the degrees of its vertices. We prove that in any connected planar graph, the diameter is at most 5/2 times the inverse degree, and that this ratio is tight. To develop a…
Grammar compression represents a string as a context free grammar. Achieving compression requires encoding such grammar as a binary string; there are a few commonly used encodings. We bound the size of practically used encodings for several…
Let $\Gamma$ be a Cayley graph generated by a transposition tree. A natural problem is to understand how the properties of the Cayley graph depend on those of the underlying transposition tree. We focus here on diameter and distance related…
The counting function on binary values is extended to the signed case in order to count the number of transitions between contiguous locations. A generalized subdifferential for the sign change counting function is given where classical…
Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the…
Document exchange and error correcting codes are two fundamental problems regarding communications. In the first problem, Alice and Bob each holds a string, and the goal is for Alice to send a short sketch to Bob, so that Bob can recover…
Since some years, non-overlapping sets of strings (also called cross-bifix-free sets) have had an increasing interest in the frame of the researches about Theory of Codes. Recently some non-overlapping sets of strings with variable length…
Permutation polynomials over a ring of modulo $2^w$ are compatible with digital computers and digital signal processors, and so they are in particular expected to be useful for cryptography and pseudo random number generator. In general,…
There have been several spectral bounds for the percolation transition in networks, using spectrum of matrices associated with the network such as the adjacency matrix and the non-backtracking matrix. However they are far from being tight…
Various approaches to alignment-free sequence comparison are based on the length of exact or inexact word matches between two input sequences. Haubold {\em et al.} (2009) showed how the average number of substitutions between two DNA…
This article shows that any type of binary data can be defined as a collection from codewords of variable length. This feature helps us to define an Injective and surjective function from the suggested codewords to the required codewords.…