Related papers: BSEPACK User's Guide
Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerful…
1. Natural sounds have been recorded for millions of hours over the previous decades using passive acoustic monitoring. Improvements in deep learning models have vastly accelerated the analysis of large portions of this data. While new…
We present an application, EasyScan_HEP, for connecting programs to scan the parameter space of High Energy Physics (HEP) models using various sampling algorithms. We develop EasyScan_HEP according to the principle of flexibility and…
PESummary is a Python software package for processing and visualising data from any parameter estimation code. The easy to use Python executable scripts and extensive online documentation has resulted in PESummary becoming a key component…
This paper was written in 2015, and published in the Journal of Humanistic Mathematics. This paper announces the first issue (2015) of Enchiridion: Mathematics User's Guides, a project to produce peer-reviewed User's Guides as companions to…
SI Toolbox is a package for estimating the isotropy violation in the CMB sky. It can be used for estimating the BipoSH coefficients, Dipole modulation, and Doppler boost parameters etc. Different Fortran subroutines, provided with this…
An open-source middleware EigenKernel was developed for use with parallel generalized eigenvalue solvers or large-scale electronic state calculation to attain high scalability and usability. The middleware enables the users to choose the…
This document contains the mathematical introduction to RORPack - a Python software library for robust output tracking and disturbance rejection for linear PDE systems. The RORPack library is open-source and freely available at…
FastJet is a C++ package that provides a broad range of jet finding and analysis tools. It includes efficient native implementations of all widely used 2-to-1 sequential recombination jet algorithms for pp and e+e- collisions, as well as…
SpeechPy is an open source Python package that contains speech preprocessing techniques, speech features, and important post-processing operations. It provides most frequent used speech features including MFCCs and filterbank energies…
The R package BNSP provides a unified framework for semiparametric location-scale regression and stochastic search variable selection. The statistical methodology that the package is built upon utilizes basis function expansions to…
Modern scientific software stacks have become extremely complex, using many programming models and libraries to exploit a growing variety of GPUs and accelerators. Package managers can mitigate this complexity using dependency solvers, but…
This is a book on elementary mathematics suitable to use in courses for first-year students of science and engineering. Students often find the formal approach to math courses rather discouraging, and demand 'rel-life applications' in order…
AI tools like ChatGPT and Be-My-AI are increasingly being used by blind individuals. Although prior work has explored their use in some Do-It-Yourself (DIY) tasks by blind individuals, little is known about how they use these tools and the…
Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…
We present celmech, an open-source Python package designed to facilitate a wide variety of celestial mechanics calculations. The package allows users to formulate and integrate equations of motion incorporating user-specified terms from the…
This manual describes version 1.6 of the programming language hepawk, designed for convenient scanning of data structures arising in the simulation of high energy physics events. The interpreter for this language has been implemented in…
BioNetFit is a software tool designed for solving parameter identification problems that arise in the development of rule-based models. It solves these problems through curve fitting (i.e., nonlinear regression). BioNetFit is compatible…
This is a report from the Libraries and Tools Working Group of the High Energy Physics Forum for Computational Excellence. It presents the vision of the working group for how the HEP software community may organize and be supported in order…
Guided troubleshooting is an inherent task in the domain of technical support services. When a customer experiences an issue with the functioning of a technical service or a product, an expert user helps guide the customer through a set of…