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Constraining parameters such as the initial mass function high-mass slope and the frequency of type Ia supernovae is of critical importance in the ongoing quest to understand galactic physics and create realistic hydrodynamical simulations.…

Astrophysics of Galaxies · Physics 2020-01-08 Oliver Henry Edward Philcox , Jan Rybizki

Insect classification is important for agricultural management and ecological research, as it directly affects crop health and production. However, this task remains challenging due to the complex characteristics of insects, class…

Computer Vision and Pattern Recognition · Computer Science 2025-10-08 Arefin Ittesafun Abian , Debopom Sutradhar , Md Rafi Ur Rashid , Reem E. Mohamed , Md Rafiqul Islam , Asif Karim , Kheng Cher Yeo , Sami Azam

Harmful algal blooms (HABs) are episodes of high concentrations of algae that are potentially toxic for human consumption. Mollusc farming can be affected by HABs because, as filter feeders, they can accumulate high concentrations of marine…

In regenerative medicine research, we experimentally design the composition of chemical medium. We add different components to 384-well plates and culture the biological cells. We monitor the condition of the cells and take time-lapse…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Takato Yasuno

Biological screens are plagued by false positive hits resulting from aggregation. Thus, methods to triage small colloidally aggregating molecules (SCAMs) are in high demand. Herein, we disclose a bespoke machine-learning tool to confidently…

Quantitative Methods · Quantitative Biology 2021-05-04 Kuan Lee , Ann Yang , Yen-Chu Lin , Daniel Reker , Goncalo J. L. Bernardes , Tiago Rodrigues

Diabetes encompasses a complex landscape of glycemic control that varies widely among individuals. However, current methods do not faithfully capture this variability at the meal level. On the one hand, expert-crafted features lack the…

Machine Learning · Computer Science 2023-12-07 Ke Alexander Wang , Emily B. Fox

The identification of metabolites from complex biological samples often involves matching experimental mass spectrometry data to signatures of compounds derived from massive chemical databases. However, misidentifications may result due to…

Quantitative Methods · Quantitative Biology 2023-07-11 Christine H. Chang , Bryan J. Killinger , Ryan S. Renslow , Sean M. Colby

Image segmentation is fundamental to microstructural analysis for defect identification and structure-property correlation, yet remains challenging due to pronounced heterogeneity in materials images arising from varied processing and…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Sanjeev S. Navaratna , Nikhil Thawari , Gunashekhar Mari , Amritha V P , Murugaiyan Amirthalingam , Rohit Batra

Practical applications of graphene require a reliable high-throughput method of graphene identification and quality control, which can be used for large-scale substrates and wafers. We have proposed and experimentally tested a fast and…

Materials Science · Physics 2011-06-21 Craig M. Nolen , Giovanni Denina , Desalegne Teweldebrhan , Bir Bhanu , Alexander A. Balandin

Mechanical strain and stress play a major role in biological processes such as wound healing or morphogenesis. To assess this role quantitatively, fixed or live images of tissues are acquired at a cellular precision in large fields of…

Tissues and Organs · Quantitative Biology 2019-06-12 M. Durande , S. Tlili , T. Homan , B. Guirao , F. Graner , H. Delanoë-Ayari

We present feature finding and tracking algorithms in 3D in living cells, and demonstrate their utility to measure metrics important in cell biological processes. We developed a computational imaging hybrid approach that combines automated…

Biological Physics · Physics 2015-04-06 Kemp Plumb , Sarah Elaz , Vincent Pelletier , Maria L. Kilfoil

Modern single-cell flow and mass cytometry technologies measure the expression of several proteins of the individual cells within a blood or tissue sample. Each profiled biological sample is thus represented by a set of hundreds of…

Machine Learning · Computer Science 2022-06-29 Siyuan Shan , Vishal Baskaran , Haidong Yi , Jolene Ranek , Natalie Stanley , Junier Oliva

Accurate cell counting in microscopic images is important for medical diagnoses and biological studies. However, manual cell counting is very time-consuming, tedious, and prone to subjective errors. We propose a new density regression-based…

Computer Vision and Pattern Recognition · Computer Science 2019-03-25 Shenghua He , Kyaw Thu Minn , Lilianna Solnica-Krezel , Hua Li , Mark Anastasio

Technological advances in underwater video recording are opening novel opportunities for monitoring wild fish. However, extracting data from videos is often challenging. Nevertheless, it has been recently demonstrated that accurate and…

Insects comprise millions of species, many experiencing severe population declines under environmental and habitat changes. High-throughput approaches are crucial for accelerating our understanding of insect diversity, with DNA barcoding…

Passive biometric identification enables wildlife monitoring with minimal disturbance. Using a motion-activated camera placed at an elevated position and facing downwards, we collected images of sea turtle carapace, each belonging to one of…

Computer Vision and Pattern Recognition · Computer Science 2021-06-24 Irwandi Hipiny , Hamimah Ujir , Aazani Mujahid , Nurhartini Kamalia Yahya

Micrograph quantification is an essential component of several materials science studies. Machine learning methods, in particular convolutional neural networks, have previously demonstrated performance in image recognition tasks across…

Applied Physics · Physics 2019-06-14 Elizabeth Kautz , Wufei Ma , Saumyadeep Jana , Arun Devaraj , Vineet Joshi , Bülent Yener , Daniel Lewis

Obtaining in situ measurements of biological microparticles is crucial for both scientific research and numerous industrial applications (e.g., early detection of harmful algal blooms, monitoring yeast during fermentation). However,…

Biological Physics · Physics 2023-01-25 Delaney Sanborn , Ruichen He , Lei Feng , Jiarong Hong

Metagenomics is an approach for characterizing environmental microbial communities in situ, it allows their functional and taxonomic characterization and to recover sequences from uncultured taxa. For communities of up to medium diversity,…

Quantitative Methods · Quantitative Biology 2014-06-30 I. Gregor , J. Dröge , M. Schirmer , C. Quince , A. C. McHardy

Colonoscopy is the choice procedure to diagnose colon and rectum cancer, from early detection of small precancerous lesions (polyps), to confirmation of malign masses. However, the high variability of the organ appearance and the complex…

Computer Vision and Pattern Recognition · Computer Science 2024-05-07 Josué Ruano , Martín Gómez , Eduardo Romero , Antoine Manzanera