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Several modifications of the famous mathematical Game of Life are introduced by making Game of Life rules stochastic and mutual influence of cells in their 8-neighborhood on a rectangular lattice spatially non-uniform. Results are reported…

Cellular Automata and Lattice Gases · Physics 2013-05-01 Leonid Yaroslavsky

We typically think of cells as responding to external signals independently by regulating their gene expression levels, yet they often locally exchange information and coordinate. Can such spatial coupling be of benefit for conveying…

Molecular Networks · Quantitative Biology 2015-01-19 Thomas R. Sokolowski , Gašper Tkačik

Traditional top-down robotic design often lacks the adaptability needed to handle real-world complexities, prompting the need for more flexible approaches. Therefore, this study introduces a novel cellular plasticity model tailored for…

Robotics · Computer Science 2024-08-13 Trevor R. Smith , Thomas J. Smith , Nicholas S. Szczecinski , Sergiy Yakovenko , Yu Gu

A quantum system weakly interacting with a fast environment usually undergoes a relaxation with complex frequencies whose imaginary parts are damping rates quadratic in the coupling to the environment, in accord with Fermi's ``Golden…

Quantum Physics · Physics 2009-11-11 Massimiliano Esposito , Fritz Haake

We have developed a simple cellular automata model for nonlinearly coupled phase oscillators which can exhibit many important collective dynamical states found in other synchronizing systems. The state of our system is specified by a set of…

Adaptation and Self-Organizing Systems · Physics 2017-06-29 Amitava Banerjee , Muktish Acharyya

By means of the asynchronous cellular automata algorithm we study stationary states and spatial patterning in an $SIS$ model, in which the individuals' are attached to the vertices of a graph and their mobility is mimicked by varying the…

Populations and Evolution · Quantitative Biology 2016-06-22 J. M. Ilnytskyi , Y. Kozitsky , H. I. Ilnytskyi , O. Haiduchok

Rare events in non-linear dynamical systems are difficult to sample because of the sensitivity to perturbations of initial conditions and of complex landscapes in phase space. Here we discuss strategies to control these difficulties and…

Statistical Mechanics · Physics 2019-04-18 Jorge C. Leitao , Joao M. V. P. Lopes , Eduardo G. Altmann

The properties of two-state nearest-neighbour cellular automata (CA) that are capable of density classification are discussed. It is shown that these CA actually conserve the total density, rather than merely classifying it. This is also…

comp-gas · Physics 2007-05-23 N. Sukumar

We analyze pattern formation on a network of cells where each cell inhibits its neighbors through cell-to-cell contact signaling. The network is modeled as an interconnection of identical dynamical subsystems each of which represents the…

Dynamical Systems · Mathematics 2014-07-25 Ana S. Rufino Ferreira , Murat Arcak

Single and collective cell migration are fundamental processes critical for physiological phenomena ranging from embryonic development and immune response to wound healing and cancer metastasis. To understand cell migration from a physical…

Biological Physics · Physics 2023-10-10 David B. Brückner , Chase P. Broedersz

It is investigated how a spatial quenched disorder modifies the dynamics of coupled map lattices. The disorder is introduced via the presence or absence of coupling terms among lattice sites. Two nonlinear maps have been considered…

Statistical Mechanics · Physics 2009-11-11 Achille Giacometti , Maurice Rossi , Libero Battiston

The dynamics of stochastic reaction networks within cells are inevitably modulated by factors considered extrinsic to the network such as for instance the fluctuations in ribsome copy numbers for a gene regulatory network. While several…

Quantitative Methods · Quantitative Biology 2015-06-19 Christoph Zechner , Heinz Koeppl

In this paper we study $\nu$-CA on one-dimensional lattice defined over a finite set of local rules. The main goal is to determine how the local rules can be mixed to ensure the produced $\nu$-CA has some properties. In a first part, we…

Formal Languages and Automata Theory · Computer Science 2011-08-09 Julien Provillard , Enrico Formenti , Alberto Dennunzio

Interacting particle system (IPS) models have proven to be highly successful for describing the spatial movement of organisms. However, it has proven challenging to infer the interaction rules directly from data. In the field of equation…

Quantitative Methods · Quantitative Biology 2023-11-27 Daniel A. Messenger , Graycen E. Wheeler , Xuedong Liu , David M. Bortz

We study the limiting behavior of interacting particle systems indexed by large sparse graphs, which evolve either according to a discrete time Markov chain or a diffusion, in which particles interact directly only with their nearest…

Probability · Mathematics 2022-05-18 Daniel Lacker , Kavita Ramanan , Ruoyu Wu

Crawling cell motility is vital to many biological processes such as wound healing and the immune response. Using a minimal model we investigate the effects of patterned substrate adhesiveness and biophysical cell parameters on the…

Cell Behavior · Quantitative Biology 2017-11-22 Matthew S. Mizuhara , Leonid Berlyand , Igor S. Aronson

Cellular systems are becoming more heterogeneous with the introduction of low power nodes including femtocells, relays, and distributed antennas. Unfortunately, the resulting interference environment is also becoming more complicated,…

Information Theory · Computer Science 2013-04-29 Robert W. Heath , Marios Kountouris , Tianyang Bai

We demonstrate how coupling nonlinear dynamical systems can reduce the effects of noise. For simplicity we investigate noisy coupled map lattices. Noise from different lattice nodes can diffuse across the lattice and lower the noise level…

Chaotic Dynamics · Physics 2015-11-24 Behnam Kia , Sarvenaz Kia , John F. Lindner , Sudeshna Sinha , William L. Ditto

Rapid advance of experimental techniques provides an unprecedented in-depth view into complex developmental processes. Still, little is known on how the complexity of multicellular organisms evolved by elaborating developmental programs and…

Molecular Networks · Quantitative Biology 2021-07-16 Somya Mani , Tsvi Tlusty

Topological and geometrical properties and the associated topological defects find a rapidly growing interest in studying the interplay between mechanics and the collective behavior of cells on the tissue level. We here test if well studied…

Soft Condensed Matter · Physics 2023-09-06 Dennis Wenzel , Simon Praetorius , Axel Voigt
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