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Metabonomics, the measure of the fingerprint of biochemical perturbations caused by disease, drugs or toxins, recently has become a major focus of research in various areas especially indications of drug toxicity. Two types of technology…

Quantitative Methods · Quantitative Biology 2014-09-03 Mansour Taghavi Azar Sharabiani

Molecular "fingerprints" encoding structural information are the workhorse of cheminformatics and machine learning in drug discovery applications. However, fingerprint representations necessarily emphasize particular aspects of the…

Machine Learning · Statistics 2016-08-26 Steven Kearnes , Kevin McCloskey , Marc Berndl , Vijay Pande , Patrick Riley

Convolutional neural networks (CNNs) are widely used for image recognition and text analysis, and have been suggested for application on one-dimensional data as a way to reduce the need for pre-processing steps. Pre-processing is an…

Machine Learning · Computer Science 2020-05-18 Ine L. Jernelv , Dag Roar Hjelme , Yuji Matsuura , Astrid Aksnes

Molecular dynamics simulations have a prominent role in biophysics and drug discovery due to the atomistic information they provide on the structure, energetics and dynamics of biomolecules. Specialized software packages are required to…

Computational Physics · Physics 2013-10-08 Toni Giorgino

Nuclear magnetic resonance (NMR) spectroscopy provides detailed information pertaining to dynamic processes through line-shape changes, which have been traditionally limited to equilibrium conditions. However, there is a wealth of…

This work presents the use of graph learning for the prediction of multi-step experimental outcomes for applications across experimental research, including material science, chemistry, and biology. The viability of geometric learning for…

Machine Learning · Computer Science 2024-08-13 Amanda A. Volk , Robert W. Epps , Jeffrey G. Ethier , Luke A. Baldwin

Droplet microfluidics offers a versatile platform for analyzing liquid samples. Despite its potential, there is a lack of techniques that allow to reliably probe individual circulating droplets. The prospect of combining droplet…

Quantitative Methods · Quantitative Biology 2024-03-08 Marc Sulliger , Jaime Ortega Arroyo , Romain Quidant

Nuclear Magnetic Resonance (NMR) spectroscopy is a crucial analytical technique used for molecular structure elucidation, with applications spanning chemistry, biology, materials science, and medicine. However, the frequency resolution of…

Nuclear Magnetic Resonance (NMR) spectrometry uses electro-frequency pulses to probe the resonance of a compound's nucleus, which is then analyzed to determine its structure. The acquisition time of high-resolution NMR spectra remains a…

Purpose: Detailed surgical recognition is critical for advancing AI-assisted surgery, yet progress is hampered by high annotation costs, data scarcity, and a lack of interpretable models. While scene graphs offer a structured abstraction of…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Felix Holm , Ghazal Ghazaei , Nassir Navab

We present an interactive IDL program for viewing and analyzing astronomical spectra in the context of modern imaging surveys. SpecPro's interactive design lets the user simultaneously view spectroscopic, photometric, and imaging data,…

Instrumentation and Methods for Astrophysics · Physics 2015-05-27 Daniel Masters , Peter Capak

Graph signal processing (GSP) has become an important tool in image processing because of its ability to reveal underlying data structures. Many real-life multimedia datasets, however, exhibit heterogeneous structures across frames.…

Signal Processing · Electrical Eng. & Systems 2022-04-20 Songyang Zhang , Qinwen Deng , Zhi Ding

Spectroscopy is a central pillar of materials characterization, providing useful information on properties like structure, composition, or excited state dynamics of a system. However, many spectroscopic techniques present challenges in…

Materials Science · Physics 2026-04-09 Amalya C. Johnson , Chris Fajardo , Leena Sansguiri , Weike Ye , Steven B. Torrisi

We introduce a convolutional neural network that operates directly on graphs. These networks allow end-to-end learning of prediction pipelines whose inputs are graphs of arbitrary size and shape. The architecture we present generalizes…

Nuclear Magnetic Resonance (NMR) spectroscopy is a central characterization method for molecular structure elucidation, yet interpreting NMR spectra to deduce molecular structures remains challenging due to the complexity of spectral data…

Chemical Physics · Physics 2025-07-15 Qingsong Yang , Binglan Wu , Xuwei Liu , Bo Chen , Wei Li , Gen Long , Xin Chen , Mingjun Xiao

The Spectral Airglow Temperature Imager is an instrument, specially designed for investigation of the wave processes in the Mesosphere-Lower Thermosphere. In order to determine the kinematics parameters of a wave, the values of a physical…

Computational Physics · Physics 2011-02-23 Atanas Marinov Atanassov

We propose nnstreamer, a software system that handles neural networks as filters of stream pipelines, applying the stream processing paradigm to neural network applications. A new trend with the wide-spread of deep neural network…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-16 MyungJoo Ham , Ji Joong Moon , Geunsik Lim , Wook Song , Jaeyun Jung , Hyoungjoo Ahn , Sangjung Woo , Youngchul Cho , Jinhyuck Park , Sewon Oh , Hong-Seok Kim

Over the past decade, several studies have explored the potential of magnetic resonance fingerprinting (MRF) for the quantification of brain hemodynamics, oxygenation, and perfusion. Recent advances in simulation models and reconstruction…

Signal Processing · Electrical Eng. & Systems 2025-12-16 T. Coudert , A. Delphin , A. Barrier , E L Barbier , B. Lemasson , J M Warnking , T. Christen

Flow-guided localization using in-body nanodevices in the bloodstream is expected to be beneficial for early disease detection, continuous monitoring of biological conditions, and targeted treatment. The nanodevices face size and power…

Machine Learning · Computer Science 2024-08-21 Pablo Galván , Filip Lemic , Gerard Calvo Bartra , Sergi Abadal , Xavier Costa Pérez

Generating molecular graphs is crucial in drug design and discovery but remains challenging due to the complex interdependencies between nodes and edges. While diffusion models have demonstrated their potentiality in molecular graph design,…

Machine Learning · Computer Science 2024-11-11 Xiaoyang Hou , Tian Zhu , Milong Ren , Dongbo Bu , Xin Gao , Chunming Zhang , Shiwei Sun