Related papers: Duplication Distance to the Root for Binary Sequen…
We present the first dynamic algorithms for Dyck and tree edit distances with subpolynomial update times. Dyck edit distance measures how far a parenthesis string is from a well-parenthesized expression, while tree edit distance quantifies…
We study the number of distance queries needed to identify certain properties of a hidden tree $T$ on $n$ vertices. A distance query consists of two vertices $x,y$, and the answer is the distance of $x$ and $y$ in $T$. We determine the…
A maximal repetition, or run, in a string, is a maximal periodic substring whose smallest period is at most half the length of the substring. In this paper, we consider runs that correspond to a path on a trie, or in other words, on a…
Motivated by the study of deletion channels, this work presents improved bounds on the number of subsequences obtained from a binary sting X of length n under t deletions. It is known that the number of subsequences in this setting strongly…
Binary self-dual sequences have been considered and analyzed throughout the years, and they have been used for various applications. Motivated by a construction for single-track Gray codes, we examine the structure and recursive…
Pseudo-random sequences with good statistical property, such as low autocorrelation, high linear complexity and large 2-adic complexity, have been applied in stream cipher. In general, it is difficult to give both the linear complexity and…
The process of DNA-based data storage (DNA storage for short) can be mathematically modelled as a communication channel, termed DNA storage channel, whose inputs and outputs are sets of unordered sequences. To design error correcting codes…
The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to decide whether the Hamming distance between their $n$-bit…
The generalized binary sequences of order 2 have been used to construct good binary cyclic codes [4]. The linear complexity of these sequences has been computed in [2]. The autocorrelation values of such sequences have been determined in…
Symbol-pair codes, introduced by Cassuto and Blaum [1], have been raised for symbol-pair read channels. This new idea is motivated by the limitation of the reading process in high-density data storage technologies. Yaakobi et al. [8]…
In this paper, we consider a synchronization problem between nodes $A$ and $B$ that are connected through a two--way communication channel. {Node $A$} contains a binary file $X$ of length $n$ and {node $B$} contains a binary file $Y$ that…
The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…
The well-known approach of Bose, Ray-Chaudhuri and Hocquenghem and its generalization by Hartmann and Tzeng are lower bounds on the minimum distance of simple-root cyclic codes. We generalize these two bounds to the case of repeated-root…
The linear complexity and the $k$-error linear complexity of a binary sequence are important security measures for key stream strength. By studying binary sequences with the minimum Hamming weight, a new tool named as hypercube theory is…
In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…
An orientable sequence of order $n$ is a cyclic binary sequence such that each length-$n$ substring appears at most once \emph{in either direction}. Maximal length orientable sequences are known only for $n\leq 7$, and a trivial upper bound…
We study distance properties of a general class of random directed acyclic graphs (DAGs). In a DAG, many natural notions of distance are possible, for there exists multiple paths between pairs of nodes. The distance of interest for circuits…
The classical Fibonacci sequence is known to exhibit many fascinating properties. In this paper, we explore the Fibonacci sequence and integer sequences generated by second order linear recurrence relations with positive integer…
We study an old geometric optimization problem in the plane. Given a perfect matching $M$ on a set of $n$ points in the plane, we can transform it to a non-crossing perfect matching by a finite sequence of flip operations. The flip…
We address the problem of bounding below the probability of error under maximum likelihood decoding of a binary code with a known distance distribution used on a binary symmetric channel. An improved upper bound is given for the maximum…