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Finding patterns in graphs is a fundamental problem in databases and data mining. In many applications, graphs are temporal and evolve over time, so we are interested in finding durable patterns, such as triangles and paths, which persist…

Databases · Computer Science 2024-03-26 Pankaj K. Agarwal , Xiao Hu , Stavros Sintos , Jun Yang

Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…

Machine Learning · Computer Science 2021-06-15 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen

In many real datasets such as social media streams and cyber data sources, graphs change over time through a graph update stream of edge insertions and deletions. Detecting critical patterns in such dynamic graphs plays an important role in…

Databases · Computer Science 2021-04-05 Seunghwan Min , Sung Gwan Park , Kunsoo Park , Dora Giammarresi , Giuseppe F. Italiano , Wook-Shin Han

Recently, Li et al. [2022] presented a dynamic Dyck-reachability algorithm for bidirected graphs. The basic idea is based on updating edge weights in a data structure called the merged graph $G_m$. As noted in Krishna et al. [2023], the…

Programming Languages · Computer Science 2024-01-09 Qirun Zhang

In this paper we introduce a new network reachability problem where the goal is to find the most reliable path between two nodes in a network, represented as a directed acyclic graph. Individual edges within this network may fail according…

Data Structures and Algorithms · Computer Science 2012-06-26 Allen Chang , Eyal Amir

Reachability query is a fundamental problem on graphs, which has been extensively studied in academia and industry. Since graphs are subject to frequent updates in many applications, it is essential to support efficient graph updates while…

Databases · Computer Science 2021-04-16 Qiuyi Lyu , Yuchen Li , Bingsheng He , Bin Gong

We show how every stock-flow consistent model of the macroeconomy can be represented as a directed acyclic graph. The advantages of representing the model in this way include graphical clarity, causal inference, and model specification. We…

Economics · Quantitative Finance 2014-09-17 Peter G. Fennell , David O'Sullivan , Antoine Godin , Stephen Kinsella

Finding the dominant direction of flow of information in densely interconnected regulatory or signaling networks is required in many applications in computational biology and neuroscience. This is achieved by first identifying and removing…

Molecular Networks · Quantitative Biology 2008-10-15 I. Ispolatov , Sergei Maslov

We propose two spectral algorithms for partitioning nodes in directed graphs respectively with a cyclic and an acyclic pattern of connection between groups of nodes. Our methods are based on the computation of extremal eigenvalues of the…

Data Structures and Algorithms · Computer Science 2018-05-09 H. Van Lierde , T. W. S. Chow , J. -C. Delvenne

We propose a non-parametric link prediction algorithm for a sequence of graph snapshots over time. The model predicts links based on the features of its endpoints, as well as those of the local neighborhood around the endpoints. This allows…

Machine Learning · Computer Science 2012-07-03 Purnamrita Sarkar , Deepayan Chakrabarti , Michael Jordan

Neural networks that compute over graph structures are a natural fit for problems in a variety of domains, including natural language (parse trees) and cheminformatics (molecular graphs). However, since the computation graph has a different…

Neural and Evolutionary Computing · Computer Science 2017-02-23 Moshe Looks , Marcello Herreshoff , DeLesley Hutchins , Peter Norvig

We study reachability and shortest paths problems in dynamic directed graphs. Whereas algebraic dynamic data structures supporting edge updates and reachability/distance queries have been known for quite a long time, they do not, in…

Data Structures and Algorithms · Computer Science 2022-04-01 Adam Karczmarz , Anish Mukherjee , Piotr Sankowski

Recent works on machine learning for combinatorial optimization have shown that learning based approaches can outperform heuristic methods in terms of speed and performance. In this paper, we consider the problem of finding an optimal…

We study dynamic graph algorithms in the Massively Parallel Computation model, which was inspired by practical data processing systems. Our goal is to provide algorithms that can efficiently handle large batches of edge insertions and…

Data Structures and Algorithms · Computer Science 2021-01-12 Krzysztof Nowicki , Krzysztof Onak

In this paper, we study the wireline two-unicast-Z communication network over directed acyclic graphs. The two-unicast-Z network is a two-unicast network where the destination intending to decode the second message has apriori side…

Information Theory · Computer Science 2015-02-10 Weifei Zeng , Viveck R. Cadambe , Muriel Medard

Computing a minimum path cover (MPC) of a directed acyclic graph (DAG) is a fundamental problem with a myriad of applications, including reachability. Although it is known how to solve the problem by a simple reduction to minimum flow,…

Data Structures and Algorithms · Computer Science 2023-08-21 Manuel Cáceres , Brendan Mumey , Santeri Toivonen , Alexandru I. Tomescu

We give the first almost-linear total time algorithm for deciding if a flow of cost at most $F$ still exists in a directed graph, with edge costs and capacities, undergoing decremental updates, i.e., edge deletions, capacity decreases, and…

Data Structures and Algorithms · Computer Science 2024-07-16 Jan van den Brand , Li Chen , Rasmus Kyng , Yang P. Liu , Simon Meierhans , Maximilian Probst Gutenberg , Sushant Sachdeva

We consider the problem of learning causal directed acyclic graphs from an observational joint distribution. One can use these graphs to predict the outcome of interventional experiments, from which data are often not available. We show…

Machine Learning · Statistics 2016-08-18 Jonas Peters , Joris Mooij , Dominik Janzing , Bernhard Schölkopf

In this paper we present the first algorithm in the streaming model to characterize completely the biconnectivity properties of undirected networks: articulation points, bridges, and connected and biconnected components. The motivation of…

Data Structures and Algorithms · Computer Science 2020-06-16 Giorgio Ausiello , Donatella Firmani , Luigi Laura

The pairwise reachability problem for a multi-threaded program asks, given control locations in two threads, whether they can be simultaneously reached in an execution of the program. The problem is important for static analysis and is used…

Logic in Computer Science · Computer Science 2015-07-01 Remi Bonnet , Rohit Chadha , Mahesh Viswanathan , P. Madhusudan
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