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With the development of high-throughput technologies, genomics datasets rapidly grow in size, including functional genomics data. This has allowed the training of large Deep Learning (DL) models to predict epigenetic readouts, such as…

Genomics · Quantitative Biology 2024-05-30 Alexander Rakowski , Remo Monti , Viktoriia Huryn , Marta Lemanczyk , Uwe Ohler , Christoph Lippert

Reliable prediction is an essential requirement for deep neural models that are deployed in open environments, where both covariate and semantic out-of-distribution (OOD) data arise naturally. In practice, to make safe decisions, a reliable…

Machine Learning · Computer Science 2025-04-22 Fei Zhu , Zhaoxiang Zhang

Data programming (DP) has proven to be an attractive alternative to costly hand-labeling of data. In DP, users encode domain knowledge into \emph{labeling functions} (LF), heuristics that label a subset of the data noisily and may have…

Machine Learning · Computer Science 2021-06-22 Salva Rühling Cachay , Benedikt Boecking , Artur Dubrawski

File systems play an essential role in modern society for managing precious data. To meet diverse needs, they often support many configuration parameters. Such flexibility comes at the price of additional complexity which can lead to subtle…

Operating Systems · Computer Science 2025-02-12 Tabassum Mahmud , Om Rameshwar Gatla , Duo Zhang , Carson Love , Ryan Bumann , Varun S Girimaji , Mai Zheng

In this paper, we describe an approach to populate an existing ontology with instance information present in the natural language text provided as input. An ontology is defined as an explicit conceptualization of a shared domain. This…

Information Retrieval · Computer Science 2013-02-07 Raghu Anantharangachar , Srinivasan Ramani , S Rajagopalan

Inconsistent values are commonly encountered in real-world applications, which can negatively impact data analysis and decision-making. While existing research primarily focuses on identifying the smallest removal set to resolve…

Data Structures and Algorithms · Computer Science 2025-12-23 Haoda Li , Jiahui Chen , Yu Sun , Shaoxu Song , Haiwei Zhang , Xiaojie Yuan

Online Matrix Factorization (OMF) is a fundamental tool for dictionary learning problems, giving an approximate representation of complex data sets in terms of a reduced number of extracted features. Convergence guarantees for most of the…

Machine Learning · Computer Science 2020-11-10 Hanbaek Lyu , Deanna Needell , Laura Balzano

Federated Learning (FL) is an innovative distributed machine learning paradigm that enables neural network training across devices without centralizing data. While this addresses issues of information sharing and data privacy, challenges…

Machine Learning · Computer Science 2024-12-09 Jiayu Liu , Yong Wang , Nianbin Wang , Jing Yang , Xiaohui Tao

Dependencies have played a significant role in database design for many years. They have also been shown to be useful in query optimization. In this paper, we discuss dependencies between lexicographically ordered sets of tuples. We…

Databases · Computer Science 2012-08-02 Jaroslaw Szlichta , Parke Godfrey , Jarek Gryz

Methods for the automatic composition of services into executable workflows need detailed knowledge about the application domain,in particular about the available services and their behavior in terms of input/output data descriptions. In…

Software Engineering · Computer Science 2015-03-17 Anna-Lena Lamprecht , Stefan Naujokat , Bernhard Steffen , Tiziana Margaria

Scientific metadata are often incomplete and noncompliant with community standards, limiting dataset findability, interoperability, and reuse. When reporting guidelines exist, they typically lack machine-actionable representations.…

For most intelligent assistant systems, it is essential to have a mechanism that detects out-of-domain (OOD) utterances automatically to handle noisy input properly. One typical approach would be introducing a separate class that contains…

Computation and Language · Computer Science 2020-03-30 Yueqi Feng , Jiali Lin

Requirements are inherently interconnected through various types of dependencies. Identifying these dependencies is essential, as they underpin critical decisions and influence a range of activities throughout software development. However,…

Software Engineering · Computer Science 2026-02-27 Ikram Darif , Feifei Niu , Manel Abdellatif , Lionel C. Briand , Ramesh S. , Arun Adiththan

In this paper, we explore how different selections of basis functions impact the efficacy of frequency domain techniques in statistical independence tests, and study different algorithms for extracting low-dimensional algebraic relations…

Numerical Analysis · Mathematics 2025-12-02 Juan Shi , Wenbo Wang , Wan Zhang , Han Bao , Sergio Chavez , Jingfang Huang , Yichao Wu , Kai Zhang

Code retrieval is a common practice for programmers to reuse existing code snippets in open-source repositories. Given a user query (i.e., a natural language description), code retrieval aims at searching for the most relevant ones from a…

Software Engineering · Computer Science 2022-03-30 Wenchao Gu , Zongjie Li , Cuiyun Gao , Chaozheng Wang , Hongyu Zhang , Zenglin Xu , Michael R. Lyu

Multi-column dependencies in relational databases come associated with two different computational tasks. The detection problem is to decide whether a dependency of a certain type and size holds in a given database, the discovery problem…

Data Structures and Algorithms · Computer Science 2021-03-25 Thomas Bläsius , Tobias Friedrich , Martin Schirneck

Several types of dependencies have been proposed for the static analysis of existential rule ontologies, promising insights about computational properties and possible practical uses of a given set of rules, e.g., in ontology-based query…

Artificial Intelligence · Computer Science 2022-07-21 Larry González , Alex Ivliev , Markus Krötzsch , Stephan Mennicke

Ontology-based data access (OBDA) is a popular paradigm for querying heterogeneous data sources by connecting them through mappings to an ontology. In OBDA, it is often difficult to reconstruct why a tuple occurs in the answer of a query.…

Databases · Computer Science 2019-06-04 Diego Calvanese , Davide Lanti , Ana Ozaki , Rafael Penaloza , Guohui Xiao

Rapid progress in natural language processing has led to its utilization in a variety of industrial and enterprise settings, including in its use for information extraction, specifically named entity recognition and relation extraction,…

Computation and Language · Computer Science 2021-08-13 Sharad Dixit , Varish Mulwad , Abhinav Saxena

The rise of electronic health records (EHRs) has unlocked new opportunities for medical research, but privacy regulations and data heterogeneity remain key barriers to large-scale machine learning. Federated learning (FL) enables…

Machine Learning · Computer Science 2025-05-27 Natallia Kokash , Lei Wang , Thomas H. Gillespie , Adam Belloum , Paola Grosso , Sara Quinney , Lang Li , Bernard de Bono
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