Related papers: Small-angle scattering studies of intrinsically di…
The paradigm that the primary amino acid sequence prescribes structure and thus function has for a long time been central to the understanding of protein science. Though the theory is supported by the behaviour of most structured proteins,…
A method of the mid-IR-laser microscopy has been proposed for the investigation of the large-scale electrically and recombination active defects in semiconductors and non-destructive inspection of semiconductor materials and structures in…
We argue that a finite iteration of any surface fractal can be composed of mass-fractal iterations of the same fractal dimension. Within this assertion, the scattering amplitude of surface fractal is shown to be a sum of the amplitudes of…
Distributed scatterers in InSAR (DS-InSAR) processing are essential for retrieving surface deformation in areas lacking strong point targets. Conventional workflows typically involve selecting statistically homogeneous pixels based on…
In the problem of spotlight mode airborne synthetic aperture radar (SAR) image formation, it is well-known that data collected over a wide azimuthal angle violate the isotropic scattering property typically assumed. Many techniques have…
In this paper, we study a sequential decision-making problem, called Adaptive Sampling for Discovery (ASD). Starting with a large unlabeled dataset, algorithms for ASD adaptively label the points with the goal to maximize the sum of…
Short-range interactions and long-range contacts drive the 3D folding of structured proteins. The proteins' structure has a direct impact on their biological function. However, nearly 40% of the eukaryotes proteome is composed of…
This paper reviews the state of art technology of laser induced breakdown spectroscopy (LIBS). Research on LIBS is gaining momentum in the field of instrumentation and data analysis technique due to its wide application in various field…
The small-angle scattering (SAS) from the Cantor surface fractal on the plane and Koch snowflake is considered. We develop the construction algorithm for the Koch snowflake, which makes possible the recurrence relation for the scattering…
Proteins are biomolecules of life. They fold into a great variety of three-dimensional (3D) shapes. Underlying these folding patterns are many recurrent structural fragments or building blocks (analogous to `LEGO bricks'). This paper…
Whether it be due to rapid rotation or binary interactions, deviations from spherical symmetry are common in massive stars. These deviations from spherical symmetry are known to cause non-uniform distributions of various parameters across…
Dynamic Light Scattering (DLS) and Small-Angle Neutron Scattering (SANS) are two key tools with which to probe the dynamic and static structure factor, respectively, in soft matter. Usually DLS and SANS measurements are performed…
Using the perturbation-response scanning (PRS) technique, we study a set of 23 proteins that display a variety of conformational motions upon ligand binding (e.g. shear, hinge, allosteric). In most cases, PRS determines residues that may be…
The elastic scattering process $\Lambda p\to\Lambda p$ offers insights on multiple problems in nuclear physics. $\mathrm{SU}(3)_F$ symmetry implies a close agreement between the $\Lambda p$ and $pp$ scattering cross sections. The $\Lambda…
The dynamics of many macromolecular machines is characterized by chemically-mediated structural changes that achieve large scale functional deployment through local rearrangements of constitutive protein sub-units. Motivated by recent high…
Protein design has the potential to revolutionize biotechnology and medicine. While most efforts have focused on proteins with well-defined structures, increased recognition of the functional significance of intrinsically disordered…
We report simulation studies of 33 single intrinsically disordered proteins (IDPs) using coarse-grained (CG) bead-spring models where interactions among different amino acids are introduced through a hydropathy matrix and additional…
Proteins are vital biological molecules found in every living organism, and their function is determined by what shape they fold into. Peptides are essentially subsets of proteins, and therefore ideal as model systems for protein folding.…
The structure of proteins is essential for its function. The determination of protein structures is possible by experimental or predicted by computational methods, but also a combination of both approaches is possible. Here, first an…
Intrinsically disordered proteins (IDPs) are important for biological functions. In contrast to folded proteins, molecular recognition among certain IDPs is "fuzzy" in that their binding and/or phase separation are stochastically governed…