Related papers: A bioinformatics system for searching Co-Occurrenc…
A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine…
This work presents a Biomedical Literature Question Answering (Q&A) system based on a Retrieval-Augmented Generation (RAG) architecture, designed to improve access to accurate, evidence-based medical information. Addressing the shortcomings…
While language model (LM)-powered chatbots and generative search engines excel at answering concrete queries, discovering information in the terrain of unknown unknowns remains challenging for users. To emulate the common educational…
The rapid growth of scientific literature demands efficient methods to organize and synthesize research findings. Existing taxonomy construction methods, leveraging unsupervised clustering or direct prompting of large language models…
The rapid acceleration of scientific publishing has created substantial challenges for researchers attempting to discover, contextualize, and interpret relevant literature. Traditional keyword-based search systems provide limited semantic…
An important aspect of a researcher's activities is to find relevant and related publications. The task of a recommender system for scientific publications is to provide a list of papers that match these criteria. Based on the collection of…
Co-clustering is a specific type of clustering that addresses the problem of finding groups of objects without necessarily considering all attributes. This technique has shown to have more consistent results in high-dimensional sparse data…
Citation analysis of the scientific literature has been used to study and define disciplinary boundaries, to trace the dissemination of knowledge, and to estimate impact. Co-citation, the frequency with which pairs of publications are…
Microarray technology is known as one of the most important tools for collecting DNA expression data. This technology allows researchers to investigate and examine types of diseases and their origins. However, microarray data are often…
In this paper, I propose a novel word sense disambiguation method based on the global co-occurrence information using NMF. When I calculate the dependency relation matrix, the existing method tends to produce very sparse co-occurrence…
The Precision Medicine Initiative states that treatments for a patient should take into account not only the patient's disease, but his/her specific genetic variation as well. The vast biomedical literature holds the potential for…
In complex multivariate data sets, different features usually include diverse associations with different variables, and different variables are associated within different regions. Therefore, exploring the associations between variables…
Timely access to accurate scientific literature in the battle with the ongoing COVID-19 pandemic is critical. This unprecedented public health risk has motivated research towards understanding the disease in general, identifying drugs to…
To provide AI researchers with modern tools for dealing with the explosive growth of the research literature in their field, we introduce a new platform, AI Research Navigator, that combines classical keyword search with neural retrieval to…
In this paper, we propose a novel system that integrates state-of-the-art, domain-specific large language models with advanced information retrieval techniques to deliver comprehensive and context-aware responses. Our approach facilitates…
Co-occurrence matrices, such as co-citation, co-word, and co-link matrices, have been used widely in the information sciences. However, confusion and controversy have hindered the proper statistical analysis of this data. The underlying…
We propose Coactive Learning as a model of interaction between a learning system and a human user, where both have the common goal of providing results of maximum utility to the user. At each step, the system (e.g. search engine) receives a…
Recently, order-preserving pattern (OPP) mining has been proposed to discover some patterns, which can be seen as trend changes in time series. Although existing OPP mining algorithms have achieved satisfactory performance, they discover…
Temporal action localization (TAL) is a prevailing task due to its great application potential. Existing works in this field mainly suffer from two weaknesses: (1) They often neglect the multi-label case and only focus on temporal modeling.…
As a very popular multi-label classification method, Classifiers Chain has recently been widely applied to many multi-label classification tasks. However, existing Classifier Chains methods are difficult to model and exploit the underlying…