Related papers: Minimum triplet covers of binary phylogenetic $X$-…
It is a classical result that an unrooted tree $T$ having positive real-valued edge lengths and no vertices of degree two can be reconstructed from the induced distance between each pair of leaves. Moreover, if each non-leaf vertex of $T$…
It is a classical result that any finite tree with positively weighted edges, and without vertices of degree 2, is uniquely determined by the weighted path distance between each pair of leaves. Moreover, it is possible for a (small) strict…
We study minimal vertex covers and maximal matchings on trees. We pay special attention to the corresponding backbones i.e. these vertices that are occupied and those that are empty in every minimal vertex cover (resp. these egdes that are…
This paper addresses the following questions for a given tree $T$ and integer $d\geq2$: (1) What is the minimum number of degree-$d$ subtrees that partition $E(T)$? (2) What is the minimum number of degree-$d$ subtrees that cover $E(T)$? We…
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible…
We prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as a subgraph. Our result confirms, for…
We prove that every simple polygon contains a degree 3 tree encompassing a prescribed set of vertices. We give tight bounds on the minimal number of degree 3 vertices. We apply this result to reprove a result from Bose et al. that every set…
A classical result, fundamental to evolutionary biology, states that an edge-weighted tree $T$ with leaf set $X$, positive edge weights, and no vertices of degree 2 can be uniquely reconstructed from the set of leaf-to-leaf distances…
A connected graph $G$ with at least two vertices is matching covered if each of its edges lies in a perfect matching. A matching covered graph is minimal if the removal of any edge results in a graph that is no longer matching covered. An…
The closure $\textrm{cl}(R)$ of a consistent set $R$ of triples (rooted binary trees on three leaves) provides essential information about tree-like relations that are shown by any supertree that displays all triples in $R$. In this…
Let T be a weighted tree with n leaves. Let D_{i,j} be the distance between the leaves i and j. Let D_{i,j,k}= (D_{i,j} + D_{j,k} +D_{i,k})/2. We will call such numbers "triple weights" of the tree. In this paper, we give a…
Over some types of trees with a given number of vertices, which trees minimize or maximize the total number of subtrees or leaf containing subtrees are studied. Here are some of the main results:\ (1)\, Sharp upper bound on the total number…
In this paper and a companion paper, we prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as…
Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…
We consider extremal problems related to decks and multidecks of rooted binary trees (a.k.a. rooted phylogenetic tree shapes). Here, the deck (resp. multideck) of a tree $T$ refers to the set (resp. multiset) of leaf induced binary subtrees…
Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…
In this note, we give answers to three questions from the paper [A. Das, Triameter of graphs, Discuss. Math. Graph Theory, 41 (2021), 601--616]. Namely, we obtain a tight lower bound for the triameter of trees in terms of order and number…
Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf…
We prove that the class of trees with unique minimum edge-vertex dominating sets is equivalent to the class of trees with unique minimum paired dominating sets.
Throughout the last decade, we have seen much progress towards characterising and computing the minimum hybridisation number for a set P of rooted phylogenetic trees. Roughly speaking, this minimum quantifies the number of hybridisation…