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The rnn package provides components for implementing a wide range of Recurrent Neural Networks. It is built withing the framework of the Torch distribution for use with the nn package. The components have evolved from 3 iterations, each…

Neural and Evolutionary Computing · Computer Science 2015-12-18 Nicholas Léonard , Sagar Waghmare , Yang Wang , Jin-Hwa Kim

We give a brief introduction to the software KnotPlot. The goals of this chapter are twofold: 1) to help a new user get started with using KnotPlot and 2) to provide veteran users with additional background and functionality available in…

Geometric Topology · Mathematics 2023-11-03 Robert G. Scharein , Eric J. Rawdon

Graphical models are a powerful tool in modelling and analysing complex biological associations in high-dimensional data. The R-package netgwas implements the recent methodological development on copula graphical models to (i) construct…

Applications · Statistics 2023-01-27 Pariya Behrouzi , Danny Arends , Ernst C. Wit

The R package knnwtsim provides functions to implement k nearest neighbors (KNN) forecasting using a similarity metric tailored to the forecasting problem of predicting future observations of a response series where recent observations,…

Methodology · Statistics 2021-12-14 Matthew Trupiano

RSNet is an open-source R package that provides a resampling-based framework for robust and interpretable network inference, designed to address the limited-sample-size challenges common in high-dimensional data. It supports both the…

Machine Learning · Computer Science 2026-05-14 Ziwei Huang , Zeyuan Song , Paola Sebastiani , Stefano Monti

Euler diagrams are a tool for the graphical representation of set relations. Due to their simple way of visualizing elements in the sets by geometric containment, they are easily readable by an inexperienced reader. Euler diagrams where the…

Computational Geometry · Computer Science 2024-06-12 Dominik Dürrschnabel , Uta Priss

Taking projections of high-dimensional data is a common analytical and visualisation technique in statistics for working with high-dimensional problems. Sectioning, or slicing, through high dimensions is less common, but can be useful for…

Computation · Statistics 2021-03-17 Ursula Laa , Dianne Cook , German Valencia

This work presents a guide for the use of some of the functions of the R package "multiColl" for the detection of near multicollinearity. The main contribution, in comparison to other existing packages in R or other econometric software, is…

Computation · Statistics 2019-11-01 Román Salmerón , Catalina García , José García

Cartogram drawing is a technique for showing geography-related statistical information, such as demographic and epidemiological data. The idea is to distort a map by resizing its regions according to a statistical parameter by keeping the…

Computation · Statistics 2018-08-30 Christian Panse

A symmetric quandle is a quandle with a good involution. For a knot in \$R^3\$, a knotted surface in \$R^4\$ or an \$n\$-manifold knot in \$R^{n+2}\$, the knot symmetric quandle is defined. We introduce the notion of a symmetric quandle…

Geometric Topology · Mathematics 2016-01-06 Seiichi Kamada

Monitoring data while it is processed and transformed can yield detailed insight into the dynamics of a (running) production system. The lumberjack package is a lightweight package allowing users to follow how an R object is transformed as…

Computation · Statistics 2025-12-30 Mark P. J. van der Loo

A knot is an an embedding of a circle into three-dimensional space. We say that a knot is unknotted if there is an ambient isotopy of the embedding to a standard circle. By representing knots via planar diagrams, we discuss the problem of…

Geometric Topology · Mathematics 2011-11-08 Allison Henrich , Louis H. Kauffman

Visualization of multidimensional, categorical data is a common challenge across scientific areas and, in particular, the life sciences. The goal is to create a comprehensive overview of the underlying data which allows to assess multiple…

Quantitative Methods · Quantitative Biology 2025-06-19 Matthias Flotho , Philipp Flotho , Andreas Keller

We introduce NetworKit, an open-source software package for analyzing the structure of large complex networks. Appropriate algorithmic solutions are required to handle increasingly common large graph data sets containing up to billions of…

Social and Information Networks · Computer Science 2015-11-16 Christian L. Staudt , Aleksejs Sazonovs , Henning Meyerhenke

This work presents a guide for the use of some of the functions of the multiColl package in R for the detection of near-multicollinearity. The main contribution, in comparison to other existing packages in R or other econometric software,…

Computation · Statistics 2021-07-08 R. Salmerón , C. B. García , J. García

We construct graph-valued analogues of the Kuperberg sl(3) and G2 invariants for virtual knots. The restriction of the sl(3) or G2 invariants for classical knots coincides with the usual Homflypt sl(3) invariant and G2 invariants. For…

Geometric Topology · Mathematics 2014-07-11 Louis Hirsch Kauffman , Vassily Olegovich Manturov

We present TNRKit, an open-source Julia package for Tensor Network Renormalization (TNR) of two- and three-dimensional classical statistical models and Euclidean lattice field theories. Built on top of TensorKit, it provides a…

Strongly Correlated Electrons · Physics 2026-04-21 Victor Vanthilt , Adwait Naravane , Chenqi Meng , Atsushi Ueda

This tutorial introduces (and provides, via the document source) the Quantikz LaTeX package for typesetting quantum circuit diagrams. This takes advantage of tikz to give greater control over the circuit options. Those familiar with the…

Quantum Physics · Physics 2026-02-26 Alastair Kay

An approximate formulation of a robust geometric program (RGP) as a convex program is proposed. Interest in using geometric programs (GPs) to model complex engineering systems has been growing, and this has motivated explicitly modeling the…

Optimization and Control · Mathematics 2018-08-23 Ali Saab , Edward Burnell , Warren W. Hoburg

Kwant is a Python package for numerical quantum transport calculations. It aims to be an user-friendly, universal, and high-performance toolbox for the simulation of physical systems of any dimensionality and geometry that can be described…

Mesoscale and Nanoscale Physics · Physics 2015-10-12 Christoph W. Groth , Michael Wimmer , Anton R. Akhmerov , Xavier Waintal
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