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Defects are a universal feature of crystalline solids, dictating the key properties and performance of many functional materials. Given their crucial importance yet inherent difficulty in measuring experimentally, computational methods…

We describe the open-source global fitting package GAMBIT: the Global And Modular Beyond-the-Standard-Model Inference Tool. GAMBIT combines extensive calculations of observables and likelihoods in particle and astroparticle physics with a…

The effectiveness of univariate forecasting models is often hampered by conditions that cause them stress. A model is considered to be under stress if it shows a negative behaviour, such as higher-than-usual errors or increased uncertainty.…

Machine Learning · Computer Science 2024-07-03 Ricardo Inácio , Vitor Cerqueira , Marília Barandas , Carlos Soares

We describe the development of a new toolkit for data analysis. The analysis package is based on Bayes' Theorem, and is realized with the use of Markov Chain Monte Carlo. This gives access to the full posterior probability distribution.…

Data Analysis, Statistics and Probability · Physics 2015-05-13 Allen Caldwell , Daniel Kollar , Kevin Kroeninger

Spatial transcriptomics (ST) technologies have revolutionized the study of gene expression patterns in tissues by providing multimodality data in transcriptomic, spatial, and morphological, offering opportunities for understanding tissue…

Computational Engineering, Finance, and Science · Computer Science 2024-01-17 Zelin Zang , Liangyu Li , Yongjie Xu , Chenrui Duan , Kai Wang , Yang You , Yi Sun , Stan Z. Li

Diffusion models promise to accelerate material design by directly generating novel structures with desired properties, but existing approaches typically require expensive and substantial labeled data ($>$10,000) and lack adaptability. Here…

Chemical Physics · Physics 2025-11-06 Junwu Chen , Jeff Guo , Edvin Fako , Philippe Schwaller

A MATLAB toolbox is presented, with the goal of checking occurrences of design errors typically found in fixed-point digital systems, considering finite word-length effects. In particular, the present toolbox works as a front-end to a…

Systems and Control · Computer Science 2017-02-21 Lennon Chaves , Iury Bessa , Lucas Cordeiro , Daniel Kroening , Eddie Filho

A combination of reaction-diffusion models with moving-boundary problems yields a system in which the diffusion (spreading and penetration) and reaction (transformation) evolve the system's state and geometry over time. These systems can be…

Computational Engineering, Finance, and Science · Computer Science 2020-08-26 Mojtaba Barzegari , Liesbet Geris

Amorphous solids form an enormous and underutilized class of materials. In order to drive the discovery of new useful amorphous materials further we need to achieve a closer convergence between computational and experimental methods. In…

Disordered Systems and Neural Networks · Physics 2024-11-19 Ata Madanchi , Emna Azek , Karim Zongo , Laurent K. Béland , Normand Mousseau , Lena Simine

Materials Cloud is a platform designed to enable open and seamless sharing of resources for computational science, driven by applications in materials modelling. It hosts 1) archival and dissemination services for raw and curated data,…

Monte-Carlo diffusion simulations are a powerful tool for validating tissue microstructure models by generating synthetic diffusion-weighted magnetic resonance images (DW-MRI) in controlled environments. This is fundamental for…

Computational Engineering, Finance, and Science · Computer Science 2023-05-26 Juan Luis Villarreal-Haro , Remy Gardier , Erick J Canales-Rodriguez , Elda Fischi Gomez , Gabriel Girard , Jean-Philippe Thiran , Jonathan Rafael-Patino

Applying software defect esimation techniques and presenting this information in a compact and impactful decision table can clearly illustrate to collaborative groups how critical this position is in the overall development cycle. The Test…

Software Engineering · Computer Science 2007-11-13 James Cusick

For many macromolecular systems the accurate sampling of the relevant regions on the potential energy surface cannot be obtained by a single, long Molecular Dynamics (MD) trajectory. New approaches are required to promote more efficient…

Computational Engineering, Finance, and Science · Computer Science 2016-06-02 Vivekanandan Balasubramanian , Iain Bethune , Ardita Shkurti , Elena Breitmoser , Eugen Hruska , Cecilia Clementi , Charles Laughton , Shantenu Jha

Accurate and fast prediction of materials properties is central to the digital transformation of materials design. However, the vast design space and diverse operating conditions pose significant challenges for accurately modeling arbitrary…

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

The Descriptor System Tools (DSTOOLS) is a collection of MATLAB functions for the operation on and manipulation of rational transfer function matrices via their descriptor system realizations. The DSTOOLS collection relies on the Control…

Systems and Control · Computer Science 2018-11-27 Andreas Varga

Using machine learning (ML) techniques in general and deep learning techniques in specific needs a certain amount of data often not available in large quantities in technical domains. The manual inspection of machine tool components and the…

Computer Vision and Pattern Recognition · Computer Science 2022-02-22 Tobias Schlagenhauf , Magnus Landwehr , Juergen Fleischer

In this paper, we describe compare-mt, a tool for holistic analysis and comparison of the results of systems for language generation tasks such as machine translation. The main goal of the tool is to give the user a high-level and coherent…

Computation and Language · Computer Science 2019-09-20 Graham Neubig , Zi-Yi Dou , Junjie Hu , Paul Michel , Danish Pruthi , Xinyi Wang , John Wieting

Machine learning has emerged as a powerful tool in materials discovery, enabling the rapid design of novel materials with tailored properties for countless applications, including in the context of energy and sustainability. To ensure the…

McStas and Mantid are two well established software frameworks within the neutron scattering community. McStas has been primarily used for simulating the neutron transport of instruments, while Mantid has been primarily used for data…

Instrumentation and Detectors · Physics 2016-08-26 Torben R Nielsen , Anders J Markvardsen , Peter K Willendrup