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Tools to explore scientific literature are essential for scientists, especially in biomedicine, where about a million new papers are published every year. Many such tools provide users the ability to search for specific entities (e.g.…

Computation and Language · Computer Science 2021-07-05 Sunil Mohan , Rico Angell , Nick Monath , Andrew McCallum

Community-based Question Answering (CQA) sites play an important role in addressing health information needs. However, a significant number of posted questions remain unanswered. Automatically answering the posted questions can provide a…

Machine Learning · Statistics 2016-07-05 Papis Wongchaisuwat , Diego Klabjan , Siddhartha R. Jonnalagadda

We present MedConceptsQA, a dedicated open source benchmark for medical concepts question answering. The benchmark comprises of questions of various medical concepts across different vocabularies: diagnoses, procedures, and drugs. The…

Computation and Language · Computer Science 2024-05-15 Ofir Ben Shoham , Nadav Rappoport

Objective: The aim of this study was to build an effective co-reference resolution system tailored for the biomedical domain. Materials and Methods: Experiment materials used in this study is provided by the 2011 i2b2 Natural Language…

Computation and Language · Computer Science 2025-03-14 Ping Chen , David Hinote , Guoqing Chen

The establishment of links between data (e.g., patient records) and Web resources (e.g., literature) and the proper visualization of such discovered knowledge is still a challenge in most Life Science domains (e.g., biomedicine). In this…

Information Retrieval · Computer Science 2010-12-09 R. Berlanga , E. Jimenez-Ruiz , V. Nebot

The increasing rate at which scientific knowledge is discovered and health claims shared online has highlighted the importance of developing efficient fact-checking systems for scientific claims. The usual setting for this task in the…

Computation and Language · Computer Science 2024-02-06 Juraj Vladika , Florian Matthes

The automation of text summarisation of biomedical publications is a pressing need due to the plethora of information available on-line. This paper explores the impact of several supervised machine learning approaches for extracting…

Computation and Language · Computer Science 2018-12-07 Mandeep Kaur , Diego Mollá

This paper gives comprehensive analyses of corpora based on Wikipedia for several tasks in question answering. Four recent corpora are collected,WikiQA, SelQA, SQuAD, and InfoQA, and first analyzed intrinsically by contextual similarities,…

Computation and Language · Computer Science 2018-02-06 Tomasz Jurczyk , Amit Deshmane , Jinho D. Choi

Despite the excitement behind biomedical artificial intelligence (AI), access to high-quality, diverse, and large-scale data - the foundation for modern AI systems - is still a bottleneck to unlocking its full potential. To address this…

With the rise in mobile and voice search, answer passage retrieval acts as a critical component of an effective information retrieval system for open domain question answering. Currently, there are no comparable collections that address…

Information Retrieval · Computer Science 2018-05-11 Daniel Cohen , Liu Yang , W. Bruce Croft

The paper presents an approach to build a question and answer system that is capable of processing the information in a large dataset and allows the user to gain knowledge from this dataset by asking questions in natural language form. Key…

Computation and Language · Computer Science 2019-02-07 M. R , Akram , C. P , Singhabahu , M. S. M Saad , P , Deleepa , Anupiya , Nugaliyadde , Yashas , Mallawarachchi

Scaling Visual Question Answering (VQA) to the open-domain and multi-hop nature of web searches, requires fundamental advances in visual representation learning, knowledge aggregation, and language generation. In this work, we introduce…

Computation and Language · Computer Science 2022-03-29 Yingshan Chang , Mridu Narang , Hisami Suzuki , Guihong Cao , Jianfeng Gao , Yonatan Bisk

Keeping track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts…

Multi-hop question answering (QA) remains a significant challenge in the biomedical domain, requiring systems to integrate information across multiple sources to answer complex questions. To address this problem, the BioCreative IX MedHopQA…

In the era of Big Knowledge Graphs, Question Answering (QA) systems have reached a milestone in their performance and feasibility. However, their applicability, particularly in specific domains such as the biomedical domain, has not gained…

Computation and Language · Computer Science 2020-10-19 Saeedeh Shekarpour , Abhishek Nadgeri , Kuldeep Singh

This paper describes our submissions for the Social Media Mining for Health (SMM4H)2021 shared tasks. We participated in 2 tasks:(1) Classification, extraction and normalization of adverse drug effect (ADE) mentions in English tweets…

Computation and Language · Computer Science 2021-04-16 Sidharth R , Abhiraj Tiwari , Parthivi Choubey , Saisha Kashyap , Sahil Khose , Kumud Lakara , Nishesh Singh , Ujjwal Verma

This paper describes the work of the Data Science for Digital Health (DS4DH) group at the TREC Health Misinformation Track 2021. The TREC Health Misinformation track focused on the development of retrieval methods that provide relevant,…

Information Retrieval · Computer Science 2022-02-15 Boya Zhang , Nona Naderi , Fernando Jaume-Santero , Douglas Teodoro

Question answering (QA) has been the subject of a resurgence over the past years. The said resurgence has led to a multitude of question answering (QA) systems being developed both by companies and research facilities. While a few…

Artificial Intelligence · Computer Science 2016-11-09 Ricardo Usbeck , Jonathan Huthmann , Nico Duldhardt , Axel-Cyrille Ngonga Ngomo

Table Question Answering (TQA) is an important but under-explored task. Most of the existing QA datasets are in unstructured text format and only few of them use tables as the context. To the best of our knowledge, none of TQA datasets…

Computation and Language · Computer Science 2022-07-07 Man Luo , Sharad Saxena , Swaroop Mishra , Mihir Parmar , Chitta Baral

Effective Question Answering (QA) on large biomedical document collections requires effective document retrieval techniques. The latter remains a challenging task due to the domain-specific vocabulary and semantic ambiguity in user queries.…

Information Retrieval · Computer Science 2025-08-19 Zabir Al Nazi , Vagelis Hristidis , Aaron Lawson McLean , Jannat Ara Meem , Md Taukir Azam Chowdhury