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We study network properties of networks evolving in time based on optimal transport principles. These evolve from a structure covering uniformly a continuous space towards an optimal design in terms of optimal transport theory. At…

Physics and Society · Physics 2023-10-25 Diego Baptista , Caterina De Bacco

The equilibrium state of a flexible fiber settling in a viscous fluid is examined using a combination of macroscopic experiments, numerical simulations and scaling arguments. We identify three regimes having different signatures on this…

Using numerical simulations, we characterized the behavior of an elastic membrane immersed in an active fluid. Our findings reveal a nontrivial folding and re-expansion of the membrane that is controlled by the interplay of its resistance…

Soft Condensed Matter · Physics 2015-07-24 S. A. Mallory , C. Valeriani , A. Cacciuto

The mechanical properties of cells are dominated by the cytoskeleton, an interconnected network of long elastic filaments. The connections between the filaments are provided by crosslinking proteins, which constitute, next to the filaments,…

Soft Condensed Matter · Physics 2012-10-09 Claus Heussinger

How does the shape of a network change as its size increases? Although random graph models provide some expectations for such "scaling behaviors" in the structure of networks, relatively little is known about how empirical network structure…

Social and Information Networks · Computer Science 2026-03-24 Upasana Dutta , Alexander Ray , Aaron Clauset

Biopolymer networks from the intracellular to tissue scale display high rigidity and tensile stress while having coordinations well below the normal threshold for mechanical rigidity. The elastic filaments in these networks are often…

Soft Condensed Matter · Physics 2024-11-15 Marco Aurelio Galvani Cunha , John C. Crocker , Andrea J. Liu

We study computationally the creep and yielding of athermal gels and fibre network materials under a constant imposed shear stress, within a minimal model of interconnected filaments with central forces in $d=2$ spatial dimensions. Each…

Soft Condensed Matter · Physics 2026-01-23 Michael J. Hertaeg , Suzanne M. Fielding

An elastic graph is a graph with an elasticity associated to each edge. It may be viewed as a network made out of ideal rubber bands. If the rubber bands are stretched on a target space there is an elastic energy. We characterize when a…

Metric Geometry · Mathematics 2020-02-12 Dylan P. Thurston

Using the theory of elasticity of polymer gels we show that large-scale cross-link density patterns written into the structure of the network in the melt state, can be revealed upon swelling by monitoring the monomer density patterns. We…

Soft Condensed Matter · Physics 2016-02-17 Sergey Panyukov , Yitzhak Rabin

The unique nonlinear mechanics of the fibrous extracellular matrix (ECM) facilitates long-range cell-cell mechanical communications that would be impossible on linear elastic substrates. Past research has described the contribution of two…

Biological Physics · Physics 2019-05-14 Shahar Goren , Yoni Koren , Xinpeng Xu , Ayelet Lesman

Living matter moves, deforms, and organizes itself. In cells this is made possible by networks of polymer filaments and crosslinking molecules that connect filaments to each other and that act as motors to do mechanical work on the network.…

Soft Condensed Matter · Physics 2020-12-15 Sebastian Fürthauer , Daniel J Needleman , Michael J. Shelley

Isostatic networks are minimally rigid and therefore have, generically, nonzero elastic moduli. Regular isostatic networks have finite moduli in the limit of large sizes. However, numerical simulations show that all elastic moduli of…

Disordered Systems and Neural Networks · Physics 2015-06-03 Cristian F. Moukarzel

Internally generated active stresses drive soft materials into architectures inaccessible to thermal self-assembly. We use a microtubule-based active fluid to assemble and irreversibly restructure actin-fascin networks. Subsequently, we…

Soft Condensed Matter · Physics 2026-05-13 Kyu Hwan Choi , Sattvic Ray , Reef Sweeney , Zvonimir Dogic , Sho C. Takatori

Power lines, roadways, pipelines and other physical infrastructure are critical to modern society. These structures may be viewed as spatial networks where geographic distances play a role in the functionality and construction cost of…

Physics and Society · Physics 2015-06-03 Thomas C. McAndrew , Christopher M. Danforth , James P. Bagrow

Self-shaping of curved structures, especially those involving flexible thin layers, has attracted increasing attention because of their broad potential applications in e.g. nanoelectromechanical/micro-electromechanical systems (NEMS/MEMS),…

Soft Condensed Matter · Physics 2015-12-17 Zi Chen , Gaoshan Huang , Ian Trase , Xiaomin Han , Yongfeng Mei

Time-resolved single-molecule biophysical experiments yield data that contain a wealth of dynamic information, in addition to the equilibrium distributions derived from histograms of the time series. In typical force spectroscopic setups…

Biomolecules · Quantitative Biology 2011-07-14 Michael Hinczewski , Yann von Hansen , Roland R. Netz

Identifying and explaining the structure of complex networks at different scales has become an important problem across disciplines. At the mesoscale, modular architecture has attracted most of the attention. At the macroscale, other…

Physics and Society · Physics 2018-11-09 María J. Palazzi , Javier Borge-Holthoefer , Claudio Tessone , Albert Solé-Ribalta

The heterogeneous micromechanical properties of biological tissues have profound implications across diverse medical and engineering domains. However, identifying full-field heterogeneous elastic properties of soft materials using…

Numerical Analysis · Mathematics 2025-07-09 Wensi Wu , Mitchell Daneker , Kevin T. Turner , Matthew A. Jolley , Lu Lu

In equilibrium, the physical properties of matter are set by the interactions between the constituents. In contrast, the energy input of the individual components controls the behavior of synthetic or living active matter. Great progress…

Soft Condensed Matter · Physics 2025-08-29 Q. Martinet , Y. Li , A. Aubret , E. Hannezo , J. Palacci

Simple elastic network models of DNA were developed to reveal the structure-dynamics relationships for several nucleotide sequences. First, we propose a simple all-atom elastic network model of DNA that can explain the profiles of…

Biological Physics · Physics 2016-02-17 Shuhei Isami , Naoaki Sakamoto , Hiraku Nishimori , Akinori Awazu
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