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We consider a system of one-dimensional spinless particles interacting via long-range repulsion. In the limit of strong interactions the system is a Wigner crystal, with excitations analogous to phonons in solids. In a harmonic crystal the…

Strongly Correlated Electrons · Physics 2012-04-06 K. A. Matveev , A. V. Andreev , M. Pustilnik

Current molecular dynamic simulations of biomolecules using multiple time steps to update the slowingly changing force are hampered by an instability occuring at time step equal to half the period of the fastest vibrating mode. This has…

Chemical Physics · Physics 2009-11-10 Siu A. Chin

Multiple time scale molecular dynamics enhances computational efficiency by updating slow motions less frequently than fast motions. However, in practice the largest outer time step possible is limited not by the physical forces but by…

Statistical Mechanics · Physics 2011-01-13 Joseph A. Morrone , Thomas E. Markland , Michele Ceriotti , B. J. Berne

Protein function does not solely depend on structure but often relies on dynamical transitions between distinct conformations. Despite this fact, our ability to characterize or predict protein dynamics is substantially less developed…

Statistical Mechanics · Physics 2026-05-08 Michael A. Sauer , Souvik Mondal , Brandon Neff , Sthitadhi Maiti , Matthias Heyden

For the study of complex synthetic and biological molecular systems by computer simulations one is still restricted to simple model systems or to by far too small time scales. To overcome this problem multiscale techniques are being…

Statistical Mechanics · Physics 2007-05-23 Matej Praprotnik , Kurt Kremer , Luigi Delle Site

We examine the dynamics of resonance locking in detached, tidally interacting binary systems. In a resonance lock, a given stellar or planetary mode is trapped in a highly resonant state for an extended period of time, during which the spin…

Solar and Stellar Astrophysics · Physics 2014-10-28 Joshua Burkart , Eliot Quataert , Phil Arras

Hybrid ion-atom systems provide an excellent platform for studies of state-resolved quantum chemistry at low temperatures, where quantum effects may be prevalent. Here we study theoretically the process of vibrational relaxation of an…

Atomic Physics · Physics 2020-04-01 Krzysztof Jachymski , Florian Meinert

Optical resonators have shown outstanding abilities to tailor chemical landscapes through enhanced light-matter interaction between confined optical modes and molecule vibrations. We propose a theoretical model to study cooperative…

Optics · Physics 2024-12-11 Mingxuan Xiao , Wei Wang , Wenjing Liu , Zheng Li , Shui-Jing Tang , Yun-Feng Xiao

Optical oscillators present a powerful optimization mechanism. The inherent competition for the gain resources between possible modes of oscillation entails the prevalence of the most efficient single mode. We harness this 'ultrafast'…

Optics · Physics 2016-02-23 Avi Pe'er , Igal Aharonovich

Quantum noise in a model of singly resonant frequency doubling including phase mismatch and driving in the harmonic mode is analyzed. The general formulae about the fixed points and their stability as well as the squeezing spectra…

Quantum Physics · Physics 2007-05-23 C. Cabrillo , J. L. Roldan , P. Garcia-Fernandez

We study the equilibration dynamics of closed finite quantum systems and address the question of the time needed for the system to equilibrate. In particular we focus on the scaling of the equilibration time T_{\mathrm{eq}} with the system…

Statistical Mechanics · Physics 2013-03-27 Lorenzo Campos Venuti , Sunil Yeshwanth , Stephan Haas

Many recently introduced enhanced sampling techniques are based on biasing coarse descriptors (collective variables) of a molecular system on the fly. Sometimes the calculation of such collective variables is expensive and becomes a…

Computational Physics · Physics 2015-09-01 Marco Jacopo Ferrarotti , Sandro Bottaro , Andrea Pérez-Villa , Giovanni Bussi

Molecular dynamics is one of the most commonly used approaches for studying the dynamics and statistical distributions of many physical, chemical, and biological systems using atomistic or coarse-grained models. It is often the case,…

Computational Physics · Physics 2015-06-16 Ben Leimkuhler , Daniel T. Margul , Mark E. Tuckerman

There is a renewed interest in the derivation of statistical mechanics from the dynamics of closed quantum systems. A central part of this program is to understand how far-from-equilibrium closed quantum system can behave as if relaxing to…

Equilibration of a one-dimensional system of interacting electrons requires processes that change the numbers of left- and right-moving particles. At low temperatures such processes are strongly suppressed, resulting in slow relaxation…

Mesoscale and Nanoscale Physics · Physics 2010-07-22 K. A. Matveev , A. V. Andreev , M. Pustilnik

The nonequilibrium dynamics of molecular devices is studied in the framework of a generic model for single-molecule transistors: a resonant level coupled by displacement to a single vibrational mode. In the limit of a broad level and in the…

Strongly Correlated Electrons · Physics 2013-03-28 Yuval Vinkler , Avraham Schiller , Natan Andrei

This paper summarises a numerical investigation of phase mixing in time-independent Hamiltonian systems that admit a coexistence of regular and chaotic phase space regions, allowing also for low amplitude perturbations idealised as periodic…

Astrophysics · Physics 2007-05-23 Henry E. Kandrup , Steven J. Novotny

In systems of coupled oscillators, the effects of complex signaling can be captured by time delays and phase shifts. Here, we show how time delays and phase shifts lead to different oscillator dynamics and how synchronization rates can be…

Adaptation and Self-Organizing Systems · Physics 2018-03-30 David J. Jörg , Luis G. Morelli , Saúl Ares , Frank Jülicher

Paramagnetic molecules can show long spin-coherence times, which make them good candidates as quantum bits. Reducing the efficiency of the spin-phonon interaction is the primary challenge towards achieving long coherence times over a wide…

Recent experiments in polariton chemistry have demonstrated that reaction rates can be modified by vibrational strong coupling to an optical cavity mode. Importantly, this modification only occurs when the frequency of the cavity mode is…

Chemical Physics · Physics 2023-05-15 Marit R. Fiechter , Johan E. Runeson , Joseph E. Lawrence , Jeremy O. Richardson
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