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Reconstructing precise clinical timelines is essential for modeling patient trajectories and forecasting risk in complex, heterogeneous conditions like sepsis. While unstructured clinical narratives offer semantically rich and contextually…

Computation and Language · Computer Science 2026-05-15 Sayantan Kumar , Shahriar Noroozizadeh , Juyong Kim , Jeremy C. Weiss

The search of information in large text repositories has been plagued by the so-called document-query vocabulary gap, i.e. the semantic discordance between the contents in the stored document entities on the one hand and the human query on…

Information Retrieval · Computer Science 2020-04-22 Bhawani Selvaretnam , Mohammed Belkhatir

Content-Based Image Retrieval (CBIR) locates, retrieves and displays images alike to one given as a query, using a set of features. It demands accessible data in medical archives and from medical equipment, to infer meaning after some…

Computer Vision and Pattern Recognition · Computer Science 2016-10-11 Albany E. Herrmann , Vania Vieira Estrela

We introduce and address the problem of ad hoc table retrieval: answering a keyword query with a ranked list of tables. This task is not only interesting on its own account, but is also being used as a core component in many other…

Information Retrieval · Computer Science 2018-03-09 Shuo Zhang , Krisztian Balog

This article presents the OpenCitations Index, a collection of open citation data maintained by OpenCitations, an independent, not-for-profit infrastructure organisation for open scholarship dedicated to publishing open bibliographic and…

Digital Libraries · Computer Science 2024-10-01 Ivan Heibi , Arianna Moretti , Silvio Peroni , Marta Soricetti

Information extraction from narrative clinical notes is useful for patient care, as well as for secondary use of medical data, for research or clinical purposes. Many studies focused on information extraction from English clinical texts,…

Computation and Language · Computer Science 2021-04-05 Emma Chiaramello , Francesco Pinciroli , Alberico Bonalumi , Angelo Caroli , Gabriella Tognola

Existing LLM-based medical question-answering systems lack citation generation and evaluation capabilities, raising concerns about their adoption in practice. In this work, we introduce \name, the first end-to-end framework that facilitates…

Computation and Language · Computer Science 2025-06-10 Xiao Wang , Mengjue Tan , Qiao Jin , Guangzhi Xiong , Yu Hu , Aidong Zhang , Zhiyong Lu , Minjia Zhang

In today's digital world, seeking answers to health questions on the Internet is a common practice. However, existing question answering (QA) systems often rely on using pre-selected and annotated evidence documents, thus making them…

Computation and Language · Computer Science 2024-04-15 Juraj Vladika , Florian Matthes

The objective of Content-Based Image Retrieval (CBIR) methods is essentially to extract, from large (image) databases, a specified number of images similar in visual and semantic content to a so-called query image. To bridge the semantic…

Information Retrieval · Computer Science 2015-02-12 Smarajit Bose , Amita Pal , Jhimli Mallick , Sunil Kumar , Pratyaydipta Rudra

In enterprise settings, efficiently retrieving relevant information from large and complex knowledge bases is essential for operational productivity and informed decision-making. This research presents a systematic empirical framework for…

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Performing company valuations within the domain of biotechnology, pharmacy and medical technology is a challenging task, especially when considering the unique set of risks biotech start-ups face when entering new markets. Companies…

Information Retrieval · Computer Science 2020-10-20 Albert Weichselbraun , Philipp Kuntschik , Sandro Hörler

Clinical trials are central to evidence-based medicine, yet many struggle to meet enrollment targets, despite the availability of over half a million trials listed on ClinicalTrials.gov, which attracts approximately two million users…

Computation and Language · Computer Science 2026-04-13 Cyrus Zhou , Yufei Jin , Yilin Xu , Yu-Chiang Wang , Chieh-Ju Chao , Monica S. Lam

Tables on the Web contain a vast amount of knowledge in a structured form. To tap into this valuable resource, we address the problem of table retrieval: answering an information need with a ranked list of tables. We investigate this…

Information Retrieval · Computer Science 2021-05-14 Shuo Zhang , Krisztian Balog

Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in public repositories. While most public repositories have firm…

The scientific literature is growing exponentially, and professionals are no more able to cope with the current amount of publications. Text mining provided in the past methods to retrieve and extract information from text; however, most of…

Computation and Language · Computer Science 2019-02-27 Nikola Milosevic , Cassie Gregson , Robert Hernandez , Goran Nenadic

Large language models (LLMs) are transforming the way information is retrieved with vast amounts of knowledge being summarized and presented via natural language conversations. Yet, LLMs are prone to highlight the most frequently seen…

Computation and Language · Computer Science 2024-02-20 Julien Delile , Srayanta Mukherjee , Anton Van Pamel , Leonid Zhukov

Clinical trials are central to medical progress because they help improve understanding of human health and the healthcare system. They play a key role in discovering new ways to detect, prevent, or treat diseases, and it is essential that…

Computation and Language · Computer Science 2025-10-16 Surya Tejaswi Yerramsetty , Almas Fathimah

One important challenge in modern Content-Based Medical Image Retrieval (CBMIR) approaches is represented by the semantic gap, related to the complexity of the medical knowledge. Among the methods that are able to close this gap in CBMIR,…

Information Retrieval · Computer Science 2008-12-01 Roxana Teodorescu , Daniel Racoceanu , Wee-Kheng Leow , Vladimir Cretu

Introduction: Semantic search, which retrieves documents based on conceptual similarity rather than keyword matching, offers substantial advantages for retrieval of clinical information. However, deploying semantic search across entire…