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This paper is the documentation for a numerical code for quantum transport called KNIT. The KNIT library implements a generalization of the well known recursive Green function technique for a large class of multi-terminal mesoscopic systems…

Mesoscale and Nanoscale Physics · Physics 2010-10-14 Irina Rychkova , Valentin Rychkov , Kyryl Kazymyrenko , Simone Borlenghi , Xavier Waintal

We introduce PyPulse, a Python package for imputation of biosignals in both clinical and wearable sensor settings. Missingness is commonplace in these settings and can arise from multiple causes, such as insecure sensor attachment or data…

Machine Learning · Computer Science 2024-12-10 Kevin Gao , Maxwell A. Xu , James M. Rehg , Alexander Moreno

N-Point Correlation Functions, usually with N = 2, 3, and their Fourier-space analogs power spectrum and bispectrum, are major tools used in cosmology to capture the clustering of large-scale structure. We outline how the clustering these…

Cosmology and Nongalactic Astrophysics · Physics 2025-08-12 Zachary Slepian , Farshad Kamalinejad , Alessandro Greco

NIFTY, "Numerical Information Field Theory", is a software package designed to enable the development of signal inference algorithms that operate regardless of the underlying spatial grid and its resolution. Its object-oriented framework is…

Instrumentation and Methods for Astrophysics · Physics 2013-06-06 Marco Selig , Michael R. Bell , Henrik Junklewitz , Niels Oppermann , Martin Reinecke , Maksim Greiner , Carlos Pachajoa , Torsten A. Enßlin

The scalar field theory of cosmological inflation constitutes nowadays one of the preferred scenarios for the physics of the early universe. In this paper we aim at studying the inflationary universe making use of a numerical lattice…

Cosmology and Nongalactic Astrophysics · Physics 2021-12-09 Angelo Caravano , Eiichiro Komatsu , Kaloian D. Lozanov , Jochen Weller

This paper introduces the design and implementation of PyOptInterface, a modeling language for mathematical optimization embedded in Python programming language. PyOptInterface uses lightweight and compact data structure to bridge…

Mathematical Software · Computer Science 2024-05-17 Yue Yang , Chenhui Lin , Luo Xu , Wenchuan Wu

I present a Python package developed for fitting Voigt profiles to absorption lines. The software fits multiple components for various atomic lines simultaneously allowing parameters to be tied and fixed. Moreover, the code is able to…

Instrumentation and Methods for Astrophysics · Physics 2018-03-06 Jens-Kristian Krogager

HYPERTILING is a high-performance Python library for the generation and visualization of regular hyperbolic lattices embedded in the Poincar\'e disk model. Using highly optimized, efficient algorithms, hyperbolic tilings with millions of…

Computational Physics · Physics 2024-06-27 Manuel Schrauth , Yanick Thurn , Florian Goth , Jefferson S. E. Portela , Dietmar Herdt , Felix Dusel

Creating and maintaining computer readable geometries for use in Monte Carlo Radiation Transport (MCRT) simulations is an error-prone and time-consuming task. Simulating a system often requires geometry from different sources and modelling…

Computational Physics · Physics 2022-01-27 Stewart Boogert , Andrey Abramov , Laurence Nevay , William Shields , Stuart Walker

The direct detection and characterization of planetary and substellar companions at small angular separations is a rapidly advancing field. Dedicated high-contrast imaging instruments deliver unprecedented sensitivity, enabling detailed…

Earth and Planetary Astrophysics · Physics 2019-01-25 Tomas Stolker , Markus J. Bonse , Sascha P. Quanz , Adam Amara , Gabriele Cugno , Alexander J. Bohn , Anna Boehle

An open source software package for modelling thermal neutron transport is presented. The code facilitates Monte Carlo-based transport simulations and focuses in the initial release on interactions in both mosaic single crystals as well as…

Computational Physics · Physics 2019-11-06 Xiao-Xiao Cai , Thomas Kittelmann

A new parallel computing framework has been developed to use with general-purpose radiation transport codes. The framework was implemented as a C++ module that uses MPI for message passing. The module is significantly independent of…

Accelerator Physics · Physics 2012-02-13 M. A. Kostin , N. V. Mokhov , K. Niita

Isocurvature perturbations naturally occur in models of inflation consisting of more than one scalar field. In this paper we calculate the spectrum of isocurvature perturbations generated at the end of inflation for three different…

Cosmology and Nongalactic Astrophysics · Physics 2012-03-09 Ian Huston , Adam J. Christopherson

The NTMpy code package allows for simulating the one-dimensional thermal response of multilayer samples after optical excitation, as in a typical pump-probe experiment. Several Python routines are combined and optimized to solve coupled…

Other Condensed Matter · Physics 2021-05-19 Lukas Alber , Valentino Scalera , Vivek Unikandanunni , Daniel Schick , Stefano Bonetti

This is a companion Focus Demonstration article to the PyMUSE python package, demonstrating its usage and utilities for VLT/MUSE data analysis, that include a wide range of options for spectra extractions, the creation of different types of…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Ismael Pessa , Nicolas Tejos , Cristobal Moya

In this paper, a framework with complete numerical investigation is proposed regarding the feasibility of constrained Nonlinear Model Predictive Control (NMPC) design using Data-Driven model of the cost function. Although the idea is very…

Systems and Control · Electrical Eng. & Systems 2020-05-11 Mazen Alamir

A major trend in academia and data science is the rapid adoption of Bayesian statistics for data analysis and modeling, leading to the development of probabilistic programming languages (PPL). A PPL provides a framework that allows users to…

Instrumentation and Methods for Astrophysics · Physics 2021-02-15 James. W. Nightingale , Richard G. Hayes , Matthew Griffiths

In a recent publication, we proposed that inflationary perturbation theory can be reformulated in terms of a probability transport equation, whose moments determine the correlation properties of the primordial curvature perturbation. In…

Cosmology and Nongalactic Astrophysics · Physics 2011-05-02 David J. Mulryne , David Seery , Daniel Wesley

As the overlap between traditional computational mechanics and machine learning grows, there is an increasing demand for straight-forward approaches to interface Python-based procedures with C++-based OpenFOAM. This article introduces one…

Computational Engineering, Finance, and Science · Computer Science 2026-01-22 Simon Rodriguez , Philip Cardiff

Pyqcm is a Python/C++ library that implements a few quantum cluster methods with an exact diagonalization impurity solver. Quantum cluster methods are used in the study of strongly correlated electrons to provide an approximate solution to…

Strongly Correlated Electrons · Physics 2024-01-10 Théo N. Dionne , Alexandre Foley , Moïse Rousseau , David Sénéchal
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