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Various theoretical studies have been carried out to infer relevant protein-protein interactions among pathogens and their hosts. Such studies are generally based on preferential attachment of bacteria / virus to their human receptor…

Molecular Networks · Quantitative Biology 2019-07-09 S. Chatterjee , B. S. Sanjeev

Microtubules (MTs) are important cytoskeletal structures, engaged in a number of specific cellular activities, including vesicular traffic, cell cyto-architecture and motility, cell division, and information processing within neuronal…

Subcellular Processes · Quantitative Biology 2007-05-23 Avner Priel , Arnolt J. Ramos , Jack A. Tuszynski , Horacio F. Cantiello

The innate immune system, acting as the first line of host defense, senses and adapts to foreign challenges through complex intracellular and intercellular signaling networks. Endotoxin tolerance and priming elicited by macrophages are…

Molecular Networks · Quantitative Biology 2017-08-23 Yan Fu , Trevor Glaros , Meng Zhu , Ping Wang , Zhanghan Wu , John J Tyson , Liwu Li , Jianhua Xing

Dendritic cells are known to be activated by a wide range of microbial products, leading to cytokine production and increased levels of membrane markers such as major histocompatibility complex class II molecules. Such activated dendritic…

The adaptive immune system of vertebrates can detect, respond to, and memorize diverse pathogens from past experience. While the clonal selection of T helper (Th) cells is the simple and established mechanism to better recognize new…

Populations and Evolution · Quantitative Biology 2021-03-17 Takuya Kato , Tetsuya J. Kobayashi

Parasitic two-level tunneling systems (TLS) emerge in amorphous dielectrics and constitute a serious nuisance for various microfabricated devices, where they act as a source of noise and decoherence. Here, we demonstrate a new test bed for…

Superconductivity · Physics 2017-09-19 Jan David Brehm , Alexander Bilmes , Georg Weiss , Alexey V. Ustinov , Jürgen Lisenfeld

By studying the scattering of normally incident planewaves by a single nanowire, we reveal the indispensable role of toroidal multipole excitation in multipole expansions of radiating sources. It is found that for both p-polarized and…

Optics · Physics 2015-05-21 Wei Liu , Jianfa Zhang , Bing Lei , Haojun Hu , Andrey E. Miroshnichenko

We develop a microscopic theory for nonlinear optical response of moir\'e exciton-polaritons in bilayers of transition metal dichalcogenides (TMDs). Our theory allows to study the tunnel-coupled intralayer and interlayer excitonic modes for…

Mesoscale and Nanoscale Physics · Physics 2025-07-16 Kok Wee Song , Oleksandr Kyriienko

Exosomes are significant facilitators of inter-cellular communication that can unveil cell-cell interactions, signaling pathways, regulatory mechanisms and disease diagnostics. Nonetheless, current analysis required large amount of data for…

Biomolecules · Quantitative Biology 2024-01-29 Yang Li , Xiaoming Lyu , Kuo Zhan , Haoyu Ji , Lei Qin , JianAn Huang

Background: Transposable elements (TEs) have played an important role in the diversification and enrichment of mammalian transcriptomes through various mechanisms such as exonization and intronization (the birth of new exons/introns from…

Genomics · Quantitative Biology 2010-06-17 Noa Sela , Eddo Kim , Gil Ast

Detection of quantum features in mechanical systems at the nanoscale constitutes a challenging task, given the weak interaction with other elements and the available technics. Here we describe how the interaction between two monomodal…

Quantum Physics · Physics 2015-08-10 O. P. de Sá Neto , M. C. de Oliveira , F. Nicacio , G. J. Milburn

Stem cell transplants may be considered as dynamical systems to allow sequence differences across the exomes of the transplant donors and recipients to be used to simulate an alloreactive T cell response. Whole exome sequencing was…

Discoveries of endogenous human stem cell-associated retroviruses (SCARs) revealed consistent activation of specific endogenous retroviral elements in human preimplantation embryos and documented the essential role of the sustained…

Genomics · Quantitative Biology 2015-08-11 Gennadi Glinsky

Neutrophils play a central role in immunothrombosis through the formation of neutrophil extracellular traps (NETs), a process known as NETosis. Upon stimulation, neutrophils release decondensed chromatin structures enriched with proteolytic…

The lateral diffusion of lipids within membrane is of paramount importance, serving as a central mechanism in numerous physiological processes including cell signaling, membrane trafficking, protein activity regulation, and energy…

Soft Condensed Matter · Physics 2024-07-09 V. K. Sharma , H. Srinivasan , J. Gupta , S. Mitra

The formation and dissociation of specific noncovalent interactions between a variety of macromolecules play a crucial role in the function of biological systems. During the last few years, three main lines of research led to a dramatic…

Biological Physics · Physics 2009-11-13 Pierre Bongrand

Despite the tremendous progresses in wavefront control through or inside complex scattering media, several limitations prevent reaching practical feasibility for nonlinear imaging in biological tissues. While the optimization of nonlinear…

Optics · Physics 2016-12-06 Hilton B. de Aguiar , Sylvain Gigan , Sophie Brasselet

The strategic induction of cell death serves as a crucial immune defense mechanism for the eradication of pathogenic infections within host cells. Investigating the molecular mechanisms underlying immunogenic cell pathways has significantly…

Molecular Networks · Quantitative Biology 2024-02-08 Chuang Li , Yichen Wei , Chao Qin , Shifan Chen , Xiaolong Shao

We propose an effective way to create interpretable control agents, by re-purposing the function of a biological neural circuit model, to govern simulated and real world reinforcement learning (RL) test-beds. We model the tap-withdrawal…

Neurons and Cognition · Quantitative Biology 2018-03-26 Mathias Lechner , Ramin M. Hasani , Radu Grosu

T cells orchestrate adaptive immune responses upon activation. T cell activation requires sufficiently strong binding of T cell receptors on their surface to short peptides derived from foreign proteins bound to protein products of the…

Biological Physics · Physics 2016-06-22 Andrej Kosmrlj , Mehran Kardar , Arup K. Chakraborty
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