Related papers: An Unoriented Variation on de Bruijn Sequences

A Barker sequence is a binary sequence for which all nontrivial aperiodic autocorrelations are at most 1 in magnitude. An old conjecture due to Turyn asserts that there is no Barker sequence of length greater than 13. In 1961, Turyn and…

Pseudo-random arrays and perfect maps are the two-dimensional analogs of M-sequences and de Bruijn sequences, respectively. We modify the definitions to be applied to codes. These codes are also the two-dimensional analogs of certain…

A shift rule for the prefer-max De Bruijn sequence is formulated, for all sequence orders, and over any finite alphabet. An efficient algorithm for this shift rule is presented, which has linear (in the sequence order) time and memory…

The reduction of the fragment assembly problem to (variations of) the classical Eulerian trail problem [Pevzner et al., PNAS 2001] has led to remarkable progress in genome assembly. This reduction employs the notion of de Bruijn graph…

We describe new, simple, recursive methods of construction for orientable sequences over an arbitrary finite alphabet, i.e. periodic sequences in which any sub-sequence of n consecutive elements occurs at most once in a period in either…

This paper introduces the de Bruijn graph edge minimization problem, which is related to the compression of de Bruijn graphs: find the order-k de Bruijn graph with minimum edge count among all orders. We describe an efficient algorithm that…

A nonbinary Ford sequence is a de Bruijn sequence generated by simple rules that determine the priorities of what symbols are to be tried first, given an initial word of size $n$ which is the order of the sequence being generated. This set…

The well known prefer-one, prefer-opposite, and prefer-same binary de Bruijn sequences are all constructed using simple preference rules. We apply the technique of preference functions of span one to define q-ary sequences that generalize…

A universal cycle for a set S of combinatorial objects is a cyclic sequence of length |S|that contains a representation of each element in S exactly once as a substring. If S is the set of k-subsets of [n] = {1, 2, . . . , n}, it is…

For every natural number $n\geq 2$ and every finite sequence $L$ of natural numbers, we consider the set $UD_n(L)$ of all uniquely decodable codes over an $n$-letter alphabet with the sequence $L$ as the sequence of code word lengths, as…

We study three dimensional array of numbers $B(n,k,j)$, $0\le j,k\le n$, where $B(n,k,j)$ is the number of type $B$ permutations of order $n$ with $k$ descents and $j$ minus signs. We prove in particular, that…

We introduce the notion of de Bruijn entropy of an Eulerian quiver and show how the corresponding relative entropy can be applied to practical string similarity problems. This approach explicitly links the combinatorial and…

We investigate the order of the variance of the optimal alignments score of two independent iid binary random words having the same length. The letters are equiprobable, but the scoring function is such that one letter has a larger score…

Let $A,B\subseteq\mathbb Z_n$ be given and $S=(x_1,\ldots, x_k)$ be a sequence in $\mathbb Z_n$. We say that $S$ is an $(A,B)$-weighted zero-sum sequence if there exist $a_1,\ldots,a_k\in A$ and $b_1,\ldots,b_k\in B$ such that…

This paper presents a method to find new De Bruijn cycles based on ones of lesser order. This is done by mapping a De Bruijn cycle to several vertex disjoint cycles in a De Bruijn digraph of higher order and connecting these cycles into one…

An $(r, s)$-formation is a concatenation of $s$ permutations of $r$ letters. If $u$ is a sequence with $r$ distinct letters, then let $\mathit{Ex}(u, n)$ be the maximum length of any $r$-sparse sequence with $n$ distinct letters which has…

Let k be a positive integer. A sequence s over an n-element alphabet A is called a k-radius sequence if every two symbols from A occur in s at distance of at most k. Let f_k(n) denote the length of a shortest k-radius sequence over A. We…

For any $n$ and $k$, we provide an explicit (that is, computable in polynomial time) example of integer $B_k$-sequence of size $n$ consisting of elements bounded by $n^{k+o(k)}$.

This paper describes new, simple, recursive methods of construction for orientable sequences, i.e. periodic binary sequences in which any n-tuple occurs at most once in a period in either direction. As has been previously described, such…

We prove that for all positive integers $n$ and $k$, there exists an integer $N = N(n,k)$ satisfying the following. If $U$ is a set of $k$ direction vectors in the plane and $\mathcal{J}_U$ is the set of all line segments in direction $u$…