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Related papers: Perspective: Geometrically-Frustrated Assemblies

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We solve a model that takes into account entropic barriers, frustration, and the organization of a protein-like molecule. For a chain of size $M$, there is an effective folding transition to an ordered structure. Without frustration, this…

Condensed Matter · Physics 2009-10-28 Carlos J. Camacho

The intricate three-dimensional geometries of protein tertiary structures underlie protein function and emerge through a folding process from one-dimensional chains of amino acids. The exact spatial sequence and configuration of amino…

Biomolecules · Quantitative Biology 2021-02-24 Nora Molkenthin , Steffen Mühle , Antonia S J S Mey , Marc Timme

Self-assembly materials are traditionally designed so that molecular or meso-scale components form a single kind of large structure. Here, we propose a scheme to create "multifarious assembly mixtures", which self-assemble many different…

Disordered Systems and Neural Networks · Physics 2015-06-22 Arvind Murugan , Zorana Zeravcic , Michael P. Brenner , Stanislas Leibler

Self-assembly is a key process in living systems - from the microscopic biological level (e.g. assembly of proteins into fibrils within biomolecular condensates in a human cell) through to the macroscopic societal level (e.g. assembly of…

Biological Physics · Physics 2023-12-15 Pedro D. Manrique , Frank Yingjie Huo , Sara El Oud , Neil F. Johnson

Assemblies of anisotropic particles commonly appear in studies of active many-body systems. However, in two dimensions, the geometric ramifications of the finite density of such objects are not entirely understood. To fully characterize…

Biological Physics · Physics 2019-05-29 Jakov Lovrić , Sara Kaliman , Wolfram Barfuß , Gerd E. Schröder-Turk , Ana-Sunčana Smith

Systems of randomly packed, macroscopic elements, from jammed spherical grains to tangled long filaments, represent a broad class of disordered meta-materials with a wide range of applications and manifestations in nature. A `bird nest'…

Soft Condensed Matter · Physics 2020-02-19 Nicholas Weiner , Yashraj Bhosale , Mattia Gazzola , Hunter King

Geometrically frustrated solids with non-Euclidean reference metric are ubiquitous in biology and are becoming increasingly relevant in technological applications. Often they acquire a targeted con- figuration of incompatibility through…

Soft Condensed Matter · Physics 2017-08-02 Giuseppe Zurlo , Lev Truskinovsky

Folding and aggregation of proteins, the interaction between proteins and membranes, as well as the adsorption of organic soft matter to inorganic solid substrates belong to the most interesting challenges in understanding structure and…

Soft Condensed Matter · Physics 2007-12-06 Michael Bachmann , Wolfhard Janke

Self-assembled monolayers of microparticles encoding Archimedean and non-regular tessellations promise unprecedented structure-property relationships for a wide spectrum of applications in fields ranging from optoelectronics to surface…

Geometric frustration is known to completely damage kinetic processes of some of the orbitals (and their associated quantum coherence) as to produce flat bands in the non-interacting systems. The impact of introducing additional interaction…

Strongly Correlated Electrons · Physics 2024-08-08 Xinyao Zhang , Matheus S. M. de Sousa , Xinyi Li , Anthony Hegg , Wei Ku

Cumulative geometric frustration can drive self-limited assembly and morphology selection through size-dependent energetic costs. However, the slenderness of quasi-one-dimensional systems generally suppresses the formation of long-range…

Classical Physics · Physics 2026-05-08 Snir Meiri , Efi Efrati

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

Soft Condensed Matter · Physics 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

Geometrically frustrated elastic ribbons exhibit, in many cases, significant changes in configuration depending on the relation between their width and thickness. We show that the existence of such a transition, and the scaling at which it…

Soft Condensed Matter · Physics 2021-08-12 Ido Levin , Emmanuel Siéfert , Eran Sharon , Cy Maor

We propose a general framework for solving inverse self-assembly problems, i.e. designing interactions between elementary units such that they assemble spontaneously into a predetermined structure. Our approach uses patchy particles as…

Soft Condensed Matter · Physics 2022-07-13 John Russo , Flavio Romano , Lukas Kroc , Francesco Sciortino , Lorenzo Rovigatti , Petr Sulc

Twisted and rope-like assemblies of filamentous molecules are common and vital structural elements in cells and tissue of living organisms. We study the intrinsic frustration occurring in these materials between the two-dimensional…

Soft Condensed Matter · Physics 2015-06-03 Amir Azadi , Gregory M. Grason

Conical surfaces pose an interesting challenge to crystal growth: a crystal growing on a cone can wrap around and meet itself at different radii. We use a disk-packing algorithm to investigate how this closure constraint can geometrically…

Soft Condensed Matter · Physics 2024-01-15 Jessica H. Sun , Abigail Plummer , Grace H. Zhang , David R. Nelson , Vinothan N. Manoharan

Self-assembly in natural and synthetic molecular systems can create complex aggregates or materials whose properties and functionality rises from their internal structure and molecular arrangement. The key microscopic features that control…

Soft Condensed Matter · Physics 2021-09-03 Alberto Scacchi , Maria Sammalkorpi , Tapio Ala-Nissila

We present a detailed heuristic method to quantify the degree of local energetic frustration manifested by protein molecules. Current applications are realized in computational experiments where a protein structure is visualized…

Biomolecules · Quantitative Biology 2018-12-17 A. Brenda Guzovsky , Nicholas P. Schafer , Peter G. Wolynes , Diego U. Ferreiro

Proteins are aminoacid chains that diffusively fold or unfold depending on the thermal and chemical environmental conditions. While sophisticated models account for detailed aspects of real proteins, finding traits that unify protein…

Quantum Physics · Physics 2020-08-12 Daniel Valente , Thiago Werlang

We analytically and numerically characterize the structure of hard-sphere fluids in order to review various geometrical frustration scenarios of the glass transition. We find generalized polytetrahedral order to be correlated with…

Statistical Mechanics · Physics 2013-01-07 Benoit Charbonneau , Patrick Charbonneau , Gilles Tarjus