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We study the global existence of classical solutions to volume-surface reaction-diffusion systems with control of mass. Such systems appear naturally from modeling evolution of concentrations or densities appearing both in a volume domain…

Analysis of PDEs · Mathematics 2021-01-21 Jeff Morgan , Bao Quoc Tang

We study the local statistics of orthogonal polynomial ensembles near a hard edge, subject to a multiplicative deformation of the measure. Probabilistically, this deformation corresponds to a position-dependent conditional thinning of the…

Mathematical Physics · Physics 2026-02-23 Leslie Molag , Guilherme L. F. Silva , Lun Zhang

In this work, we propose a general inversion framework to non-uniquely invert a very large class of ordinary differential equations (ODEs) into chemical reaction networks. A thorough treatment of the relevant chemical reaction network…

Molecular Networks · Quantitative Biology 2023-01-25 Su Hyeong Lee

In this work we study global well-posedness and large time behaviour for a typical reaction--diffusion system, which include degenerate diffusion, and whose non-linearities arise from chemical reactions. We show that there is an {\it…

Analysis of PDEs · Mathematics 2020-04-27 Amit Einav , Jeff Morgan , Bao Quoc Tang

The protein-polysaccharide combinations that lead to electrostatic complex and coacervates formation are the object of extensive research using both layer-by-layer and mixed emulsion approaches. The protein-polysaccharide conjugates…

Soft Condensed Matter · Physics 2022-01-25 Luigi Gentile

The site percolation on the triangular lattice stands out as one of the few exactly solved statistical systems. By initially configuring critical percolation clusters of this model and randomly reassigning the color of each percolation…

Statistical Mechanics · Physics 2024-09-20 Ming Li , Youjin Deng

All life, including cells and artificial protocells, must integrate diverse molecules into a single unit in order to reproduce. Despite expected pressure to evolve a simple system with the fastest replication speed, the mechanism by which…

Cell Behavior · Quantitative Biology 2014-08-12 Atsushi Kamimura , Kunihiko Kaneko

Irreversible aggregation is revisited in view of recent work on renormalization of complex networks. Its scaling laws and phase transitions are related to percolation transitions seen in the latter. We illustrate our points by giving the…

Data Analysis, Statistics and Probability · Physics 2011-08-26 Seung-Woo Son , Golnoosh Bizhani , Claire Christensen , Peter Grassberger , Maya Paczuski

The compound Poisson process and the Dirichlet process are the pillar structures of Renewal theory and Bayesian nonparametric theory, respectively. Both processes have many useful extensions to fulfill the practitioners needs to model the…

Applications · Statistics 2019-05-17 Arrigo Coen , Beatriz Godínez-Chaparro

Known graphical conditions for the generic or global convergence to equilibria of the dynamical system arising from a reaction network are shown to be invariant under the so-called successive removal of intermediates, a systematic procedure…

Dynamical Systems · Mathematics 2017-04-20 Michael Marcondes de Freitas , Carsten Wiuf , Elisenda Feliu

The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles have spatial extent, covering more than one lattice site. We expand the well studied Totally Asymmetric Exclusion…

Statistical Mechanics · Physics 2009-11-10 Leah B. Shaw , R. K. P. Zia , Kelvin H. Lee

We consider regular polynomial interpolation algorithms on recursively defined sets of interpolation points which approximate global solutions of arbitrary well-posed systems of linear partial differential equations. Convergence of the…

Numerical Analysis · Mathematics 2008-07-10 Joerg Kampen

Cellular morphodynamics requires solving systems of coupled partial differential equations on moving bulk and surface domains, where advection-dominant transport, structure preservation, and severe mesh distortions make robust simulation…

Numerical Analysis · Mathematics 2026-01-12 Alessandro Contri , André Massing , Padmini Rangamani

Embedding techniques allow the efficient description of correlations within localized fragments of large molecular systems, while accounting for their environment at a lower level of theory. We introduce FragPT2: a novel embedding framework…

Chemical Physics · Physics 2025-01-15 Emiel Koridon , Souloke Sen , Lucas Visscher , Stefano Polla

After surveying classical results, we introduce a generalized notion of inference system to support structural recursion on non-well-founded data types. Besides axioms and inference rules with the usual meaning, a generalized inference…

Logic in Computer Science · Computer Science 2018-04-23 Francesco Dagnino

The paper addresses the homogenization of a family of micro-models for the flow of a slightly compressible fluid in a poroelastic matrix containing periodically distibuted poroelastic inclusions, with low permeabilities and with imperfect…

Analysis of PDEs · Mathematics 2012-12-06 Abdelhamid Ainouz

This note studies feedforward circuits as models for perfect adaptation to step signals in biological systems. A global convergence theorem is proved in a general framework, which includes examples from the literature as particular cases. A…

Quantitative Methods · Quantitative Biology 2009-06-07 Eduardo D. Sontag

This paper provides a description of a new method for information processing based on holistic approach wherein analysis is a direct product of synthesis. The core of the method is iterative averaging of all the elements of a system…

Other Computer Science · Computer Science 2008-05-28 Leonid Andreev

Multisite covalent modification of proteins is omnipresent in eukaryotic cells. A well-known example is the mitogen-activated protein kinase (MAPK) cascade, where in each layer of the cascade a protein is phosphorylated at two sites. It has…

Molecular Networks · Quantitative Biology 2015-05-13 Koichi Takahashi , Sorin Tanase-Nicola , Pieter Rein ten Wolde

We analyze a general class of reversible aggregate-reorganization processes. These processes are shown to exhibit globally attracting equilibrium distributions, which are \textit{universal}, i.e. identical for large classes of models.…

Statistical Mechanics · Physics 2009-11-07 Stefan Grosskinsky , Marc Timme , Bjoern Naundorf