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Semi-labeled trees are phylogenies whose internal nodes may be labeled by higher-order taxa. Thus, a leaf labeled Mus musculus could nest within a subtree whose root node is labeled Rodentia, which itself could nest within a subtree whose…

Data Structures and Algorithms · Computer Science 2016-05-09 Yun Deng , David Fernández-Baca

Contention tree algorithm is initially invented as a solution to improve the stable throughput problem of Slotted ALOHA in multiple access schemes. Even though the throughput is stabilized in tree algorithms, the delay of requests may grow…

Information Theory · Computer Science 2017-08-01 Murat Gürsu , Alberto Martínez Alba , Wolfgang Kellerer

Genetic and comparative genomic studies indicate that extant genomes are more properly considered to be a fusion product of random mutations over generations and genomic material transfers between individuals of different lineages. This has…

Quantitative Methods · Quantitative Biology 2018-01-16 Andreas D. M. Gunawan , Bingxin Lu , Louxin Zhang

We study leaf-to-ancestor path-minimum queries on a rooted, weighted tree in the oracle model, where the only allowed value operation is a comparison oracle on edge (or node) weights. We give a static data structure that, after O(n log h)…

Data Structures and Algorithms · Computer Science 2026-05-28 Aleksey Upirvitskiy , Aleksandr Levin

Order-invariant formulas access an ordering on a structure's universe, but the model relation is independent of the used ordering. Order invariance is frequently used for logic-based approaches in computer science. Order-invariant formulas…

Logic in Computer Science · Computer Science 2016-06-22 Michael Elberfeld , Marlin Frickenschmidt , Martin Grohe

Several variants of the Constraint Satisfaction Problem have been proposed and investigated in the literature for modelling those scenarios where solutions are associated with some given costs. Within these frameworks computing an optimal…

Artificial Intelligence · Computer Science 2012-09-18 Georg Gottlob , Gianluigi Greco , Francesco Scarcello

By adapting the iterative yardstick construction of Stockmeyer, we show that the reachability problem for vector addition systems with a stack does not have elementary complexity. As a corollary, the same lower bound holds for the…

Formal Languages and Automata Theory · Computer Science 2013-10-08 Ranko Lazic

We prove a complexity dichotomy theorem for a class of Holant problems on planar 3-regular bipartite graphs. The complexity dichotomy states that for every weighted constraint function $f$ defining the problem (the weights can even be…

Computational Complexity · Computer Science 2023-03-30 Jin-Yi Cai , Austen Z. Fan

We consider the problem of learning the structure of undirected graphical models with bounded treewidth, within the maximum likelihood framework. This is an NP-hard problem and most approaches consider local search techniques. In this…

Machine Learning · Computer Science 2012-12-12 K. S. Sesh Kumar , Francis Bach

We address the problem of building and maintaining distributed spanning trees in highly dynamic networks, in which topological events can occur at any time and any rate, and no stable periods can be assumed. In these harsh environments, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-07-23 Arnaud Casteigts , Serge Chaumette , Frédéric Guinand , Yoann Pigné

Given a directed graph $G=(V,A)$, the Directed Maximum Leaf Spanning Tree problem asks to compute a directed spanning tree (i.e., an out-branching) with as many leaves as possible. By designing a Branch-and-Reduced algorithm combined with…

Data Structures and Algorithms · Computer Science 2009-11-11 Daniel Raible , Henning Fernau

Research on information extraction from Web pages (wrapping) has seen much activity recently (particularly systems implementations), but little work has been done on formally studying the expressiveness of the formalisms proposed or on the…

Databases · Computer Science 2007-05-23 Georg Gottlob , Christoph Koch

It is shown that the finite satisfiability problem for two-variable logic over structures with one total preorder relation, its induced successor relation, one linear order relation and some further unary relations is EXPSPACE-complete.…

Logic in Computer Science · Computer Science 2015-07-01 Thomas Schwentick , Thomas Zeume

We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem…

Quantitative Methods · Quantitative Biology 2015-05-19 Julien Allali , Cédric Chauve , Pascal Ferraro , Anne-Laure Gaillard

Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…

Data Structures and Algorithms · Computer Science 2023-09-13 Martin Nägele , Rico Zenklusen

We introduce a tree-based formulation for the minimum-cost multi-commodity flow problem that addresses large-scale instances. The method decomposes the source-based model by representing flows as convex combinations of trees rooted at…

Optimization and Control · Mathematics 2025-10-03 Simon Spoorendonk , Bjørn Petersen

We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…

Data Structures and Algorithms · Computer Science 2024-07-12 Kristóf Bérczi , Tamás Király , Yusuke Kobayashi , Yutaro Yamaguchi , Yu Yokoi

We give an intuitive method--using local, cyclic replica symmetry--to isolate exponential tree decay in truncated (connected) correlations. We give an expansion and use the symmetry to show that all terms vanish, except those displaying…

Mathematical Physics · Physics 2007-06-20 Arthur Jaffe , David Moser

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

Data Structures and Algorithms · Computer Science 2017-11-29 Mahdi Belbasi , Martin Fürer

Given a tree $T$ on $n$ vertices, and $k, b, s_1, \ldots, s_b \in N$, the Tree Partitioning problem asks if at most $k$ edges can be removed from $T$ so that the resulting components can be grouped into $b$ groups such that the number of…

Computational Complexity · Computer Science 2017-04-21 Zhao An , Qilong Feng , Iyad Kanj , Ge Xia