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Graph neural networks trained to predict observable dynamics can be used to decompose the temporal activity of complex heterogeneous systems into simple, interpretable representations. Here we apply this framework to simulated neural…

Neurons and Cognition · Quantitative Biology 2026-02-17 Cédric Allier , Larissa Heinrich , Magdalena Schneider , Stephan Saalfeld

A number of inference problems with sensor networks involve projecting a measured signal onto a given subspace. In existing decentralized approaches, sensors communicate with their local neighbors to obtain a sequence of iterates that…

Entropic causal inference is a recent framework for learning the causal graph between two variables from observational data by finding the information-theoretically simplest structural explanation of the data, i.e., the model with smallest…

Machine Learning · Computer Science 2025-09-23 Spencer Compton , Kristjan Greenewald , Dmitriy Katz , Murat Kocaoglu

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

Understanding and interacting with everyday physical scenes requires rich knowledge about the structure of the world, represented either implicitly in a value or policy function, or explicitly in a transition model. Here we introduce a new…

Using graphs to model irregular information domains is an effective approach to deal with some of the intricacies of contemporary (network) data. A key aspect is how the data, represented as graph signals, depend on the topology of the…

Signal Processing · Electrical Eng. & Systems 2023-05-02 Fernando J. Iglesias Garcia , Santiago Segarra , Antonio G. Marques

We study blind deconvolution of signals defined on the nodes of an undirected graph. Although observations are bilinear functions of both unknowns, namely the forward convolutional filter coefficients and the graph signal input, a filter…

Signal Processing · Electrical Eng. & Systems 2024-12-20 Chang Ye , Gonzalo Mateos

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

While a common assumption in graph signal analysis is the smoothness of the signals or the band-limitedness of their spectrum, in many instances the spectrum of real graph data may be concentrated at multiple regions of the spectrum,…

Machine Learning · Statistics 2025-02-20 Osman Furkan Kar , Gülce Turhan , Elif Vural

We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in…

Machine Learning · Computer Science 2025-02-26 Batu El , Deepro Choudhury , Pietro Liò , Chaitanya K. Joshi

This paper characterizes the difficulty of estimating a network's eigenvector centrality only from data on the nodes, i.e., with no information about the topology of the network. We model this nodal data as graph signals generated by…

Social and Information Networks · Computer Science 2020-05-05 T. Mitchell Roddenberry , Santiago Segarra

When approaching graph signal processing tasks, graphs are usually assumed to be perfectly known. However, in many practical applications, the observed (inferred) network is prone to perturbations which, if ignored, will hinder performance.…

Signal Processing · Electrical Eng. & Systems 2021-03-11 Samuel Rey , Antonio G. Marques

Predator-prey networks originating from different aqueous and terrestrial environments are compared to assess if the difference in environments of these networks produce any significant difference in the structure of such predator-prey…

Populations and Evolution · Quantitative Biology 2019-01-11 Shashankaditya Upadhyay , Sudeepto Bhattacharya

We consider fair network topology inference from nodal observations. Real-world networks often exhibit biased connections based on sensitive nodal attributes. Hence, different subpopulations of nodes may not share or receive information…

Signal Processing · Electrical Eng. & Systems 2024-03-26 Madeline Navarro , Samuel Rey , Andrei Buciulea , Antonio G. Marques , Santiago Segarra

We show that viewing graphs as sets of node features and incorporating structural and positional information into a transformer architecture is able to outperform representations learned with classical graph neural networks (GNNs). Our…

Machine Learning · Computer Science 2021-06-11 Grégoire Mialon , Dexiong Chen , Margot Selosse , Julien Mairal

We show that the problem of recovering the topology and admittance of an electrical network from power and voltage data at all vertices is often ill-posed, and sometimes it even has multiple solutions. We reformulate the problem to seek for…

Optimization and Control · Mathematics 2026-01-19 Álvaro Samperio

Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed…

Machine Learning · Computer Science 2026-05-08 Selin Ceydeli , Rui Wang , Kubilay Atasu

In graph signal processing, the graph adjacency matrix or the graph Laplacian commonly define the shift operator. The spectral decomposition of the shift operator plays an important role in that the eigenvalues represent frequencies and the…

Numerical Analysis · Computer Science 2016-11-09 Stephen Kruzick , Jose M. F. Moura

We address the problem of inferring the topology of a wireless network using limited observational data. Specifically, we assume that we can detect when a node is transmitting, but no further information regarding the transmission is…

Networking and Internet Architecture · Computer Science 2025-07-03 James Martin , Tristan Pryer , Luca Zanetti

It is well-known that the behavior of many dynamical processes running on networks is intimately related to the eigenvalue spectrum of the network. In this paper, we address the problem of inferring global information regarding the…

Optimization and Control · Mathematics 2011-01-14 Victor M. Preciado , Ali Jadbabaie