Related papers: Sam2bam: High-Performance Framework for NGS Data P…

Graph pattern mining (GPM) is used in diverse application areas including social network analysis, bioinformatics, and chemical engineering. Existing GPM frameworks either provide high-level interfaces for productivity at the cost of…

General matrix multiplication (GeMM) is a core operation in virtually all AI applications. Systolic array (SA) based architectures have shown great promise as GeMM hardware accelerators thanks to their speed and energy efficiency.…

Large language models (LLMs) have revolutionized Natural Language Processing (NLP), but their size creates computational bottlenecks. We introduce a novel approach to create accurate, sparse foundational versions of performant LLMs that…

The Segment Anything Model (SAM) is widely used for segmenting a diverse range of objects in natural images from simple user prompts like points or bounding boxes. However, SAM's performance decreases substantially when applied to…

Performance modeling of parallel applications on multicore processors remains a challenge in computational co-design due to multicore processors' complex design. Multicores include complex private and shared memory hierarchies. We present a…

The application of Artificial Intelligence has become a powerful approach to detecting software vulnerabilities. However, effective vulnerability detection relies on accurately capturing the semantic structure of code and its contextual…

The advent of high-throughput sequencing technologies has revolutionized genome analysis by enabling the rapid and cost-effective sequencing of large genomes. Despite these advancements, the increasing complexity and volume of genomic data…

Spurred by widening gap between data processing speed and data communication speed in Von-Neumann computing architectures, some bioinformatic applications have harnessed the computational power of Processing-in-Memory (PIM) platforms.…

Large language models (LLMs) are powerful but resource intensive, limiting accessibility. HITgram addresses this gap by offering a lightweight platform for n-gram model experimentation, ideal for resource-constrained environments. It…

Recent segmentation methods, which adopt large-scale data training and transformer architecture, aim to create one foundation model that can perform multiple tasks. However, most of these methods rely on heavy encoder and decoder…

We present a method that uses a Bloom filter transform to preprocess data for machine learning. Each sample is encoded into a compact bit-array representation using hash-based encoding, producing a fixed-length feature space that reduces…

Spiking Neural Networks (SNNs) have gained significant research attention in the last decade due to their potential to drive resource-constrained edge devices. Though existing SNN accelerators offer high efficiency in processing sparse…

Segment Anything Model (SAM) has attracted significant attention due to its impressive zero-shot transfer performance and high versatility for numerous vision applications (like image editing with fine-grained control). Many of such…

Genome analysis has revolutionized fields such as personalized medicine and forensics. Modern sequencing machines generate vast amounts of fragmented strings of genome data called reads. The alignment of these reads into a complete DNA…

Manual annotation of volumetric medical images, such as magnetic resonance imaging (MRI) and computed tomography (CT), is a labor-intensive and time-consuming process. Recent advancements in foundation models for video object segmentation,…

The latest industrial inference engines, such as FasterTransformer and TurboTransformers, have verified that half-precision floating point (FP16) and 8-bit integer (INT8) quantization can greatly improve model inference speed. However, the…

Pixel-level vision tasks, such as semantic segmentation, require extensive and high-quality annotated data, which is costly to obtain. Semi-supervised semantic segmentation (SSSS) has emerged as a solution to alleviate the labeling burden…

This paper summarizes the idea of Subarray-Level Parallelism (SALP) in DRAM, which was published in ISCA 2012, and examines the work's significance and future potential. Modern DRAMs have multiple banks to serve multiple memory requests in…

The second-order training methods can converge much faster than first-order optimizers in DNN training. This is because the second-order training utilizes the inversion of the second-order information (SOI) matrix to find a more accurate…

The Segment Anything Model (SAM) family has become a widely adopted vision foundation model, but its ability to control segmentation granularity remains limited. Users often need to refine results manually - by adding more prompts or…