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Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…

Quantitative Methods · Quantitative Biology 2015-11-02 Momoko Hayamizu , Hiroshi Endo , Kenji Fukumizu

The seminal work of Chow and Liu (1968) shows that approximation of a finite probabilistic system by Markov trees can achieve the minimum information loss with the topology of a maximum spanning tree. Our current paper generalizes the…

Data Structures and Algorithms · Computer Science 2018-01-23 Liang Ding , Di Chang , Russell Malmberg , Aaron Martinez , David Robinson , Matthew Wicker , Hongfei Yan , Liming Cai

We analyze a new general representation for the Minimum Weight Steiner Tree (MST) problem which translates the topological connectivity constraint into a set of local conditions which can be analyzed by the so called cavity equations…

Statistical Mechanics · Physics 2009-01-14 M. Bayati , A. Braunstein , R. Zecchina

Spanning tree problems with specialized constraints can be difficult to solve in real-world scenarios, often requiring intricate algorithmic design and exponential time. Recently, there has been growing interest in end-to-end deep neural…

Machine Learning · Computer Science 2023-06-13 Yuchen Shi , Congying Han , Tiande Guo

Given a directed graph $G=(V,A)$, the Directed Maximum Leaf Spanning Tree problem asks to compute a directed spanning tree (i.e., an out-branching) with as many leaves as possible. By designing a Branch-and-Reduced algorithm combined with…

Data Structures and Algorithms · Computer Science 2009-11-11 Daniel Raible , Henning Fernau

Finding spanning trees under various constraints is a classic problem with applications in many fields. Recently, a novel notion of "dense" ("sparse") tree, and in particular spanning tree (DST and SST respectively), is introduced as the…

Optimization and Control · Mathematics 2020-05-29 Mustafa Ozen , Goran Lesaja , Hua Wang

There are many classical problems in P whose time complexities have not been improved over the past decades. Recent studies of "Hardness in P" have revealed that, for several of such problems, the current fastest algorithm is the best…

Data Structures and Algorithms · Computer Science 2017-10-24 Yoichi Iwata , Tomoaki Ogasawara , Naoto Ohsaka

Consider a set of labels $L$ and a set of trees ${\mathcal T} = \{{\mathcal T}^{(1), {\mathcal T}^{(2), ..., {\mathcal T}^{(k) \$ where each tree ${\mathcal T}^{(i)$ is distinctly leaf-labeled by some subset of $L$. One fundamental problem…

Data Structures and Algorithms · Computer Science 2008-02-21 Viet Tung Hoang , Wing-Kin Sung

We consider the problem of computing a Steiner tree of minimum cost under a hop constraint which requires the depth of the tree to be at most $k$. Our main result is an exact algorithm for metrics induced by graphs with bounded treewidth…

Data Structures and Algorithms · Computer Science 2022-10-12 Martin Böhm , Ruben Hoeksma , Nicole Megow , Lukas Nölke , Bertrand Simon

In the classical (min-cost) Steiner tree problem, we are given an edge-weighted undirected graph and a set of terminal nodes. The goal is to compute a min-cost tree S which spans all terminals. In this paper we consider the min-power…

Data Structures and Algorithms · Computer Science 2012-05-17 Fabrizio Grandoni

Many combinatorial optimization problems can be formulated as the search for a subgraph that satisfies certain properties and minimizes the total weight. We assume here that the vertices correspond to points in a metric space and can take…

Data Structures and Algorithms · Computer Science 2024-12-25 Marin Bougeret , Jérémy Omer , Michael Poss

One of the most popular and important first-order iterations that provides optimal complexity of the classical proximal gradient method (PGM) is the "Fast Iterative Shrinkage/Thresholding Algorithm" (FISTA). In this paper, two inexact…

Optimization and Control · Mathematics 2020-05-11 Yunier Bello-Cruz , Max L. N. Gonçalves , Nathan Krislock

The Prize-Collecting Steiner Tree (PCST) problem is a generalization of the Steiner Tree problem that has applications in network design, content distribution networks, and many more. There are a few centralized approximation algorithms…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-21 Parikshit Saikia , Sushanta Karmakar , Aris T. Pagourtzis

We consider the parameterized version of the maximum internal spanning tree problem, which, given an $n$-vertex graph and a parameter $k$, asks for a spanning tree with at least $k$ internal vertices. Fomin et al. [J. Comput. System Sci.,…

Data Structures and Algorithms · Computer Science 2014-12-30 Wenjun Li , Jianxin Wang , Jianer Chen , Yixin Cao

We consider the problem of optimally compressing and caching data across a communication network. Given the data generated at edge nodes and a routing path, our goal is to determine the optimal data compression ratios and caching decisions…

Networking and Internet Architecture · Computer Science 2018-01-25 Jian Li , Faheem Zafari , Don Towsley , Kin K. Leung , Ananthram Swami

The problem of {\em efficiently} finding the best match for a query in a given set with respect to the Euclidean distance or the cosine similarity has been extensively studied in literature. However, a closely related problem of efficiently…

Computational Geometry · Computer Science 2021-06-24 Parikshit Ram , Alexander G. Gray

The Minimum Weight Steiner Tree (MST) is an important combinatorial optimization problem over networks that has applications in a wide range of fields. Here we discuss a general technique to translate the imposed global connectivity…

Statistical Mechanics · Physics 2009-11-13 M. Bayati , C. Borgs , A. Braunstein , J. Chayes , A. Ramezanpour , R. Zecchina

The semi-streaming model is a variant of the streaming model frequently used for the computation of graph problems. It allows the edges of an $n$-node input graph to be read sequentially in $p$ passes using $\tilde{O}(n)$ space. In this…

Data Structures and Algorithms · Computer Science 2020-01-22 Yi-Jun Chang , Martin Farach-Colton , Tsan-Sheng Hsu , Meng-Tsung Tsai

The graph invariant EPT-sum has cropped up in several unrelated fields in later years: As an objective function for hierarchical clustering, as a more fine-grained version of the classical edge ranking problem, and, specifically when the…

Data Structures and Algorithms · Computer Science 2024-07-08 Svein Høgemo

We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…

Combinatorics · Mathematics 2019-07-04 Abdel-Rahman Madkour , Phillip Nadolny , Matthew Wright