Related papers: Semi-phenomenological classification models of the…
A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex…
Using basic properties of p-adic numbers, we consider a simple new approach to describe main aspects of DNA sequence and genetic code. Central role in our investigation plays an ultrametric p-adic information space which basic elements are…
We define a $q$-deformation of the classical ring of integer-valued polynomials which we call the ring of quantum integer-valued polynomials. We show that this ring has a remarkable combinatorial structure and enjoys many positivity…
Our aim in this thesis is to use the language of deformation-quantization to understand certain quantized algebras by looking at properties of the corresponding commutative ones, and conversely to obtain results about the commutative…
A q-deformed version of classical analysis is given to quantum spaces of physical importance, i.e. Manin plane, q-deformed Euclidean space in three or four dimensions, and q-deformed Minkowski space. The subject is presented in a rather…
We present a framework for the study of $q$-difference equations satisfied by $q$-semi-classical orthogonal systems. As an example, we identify the $q$-difference equation satisfied by a deformed version of the little $q$-Jacobi polynomials…
In a multicellular organism different cell types express a gene in different amounts. Samples from which gene expression levels can be measured typically contain a mixture of different cell types, the resulting measurements thus give only…
In this contribution, we discuss the basic concepts of genotypes and phenotypes in tree-based GP (TGP), and then analyze their behavior using five benchmark datasets. We show that TGP exhibits the same behavior that we can observe in other…
Several technological applications require the translation of a protein into a nucleic acid that codes for it (``backtranslation''). The degeneracy of the genetic code makes this translation ambiguous; moreover, not every translation is…
In 1987, Andrews and Baxter introduced six kinds of $q$-trinomial coefficients in exploring the solution of a model in statistical mechanics. In this paper, we give some $q$-supercongruences for the truncated forms of these polynomials.
The genetic code is the function from the set of codons to the set of amino acids by which a DNA sequence encodes proteins. Since the codons also influence the shape of the DNA molecule itself, the same sequence that encodes a protein also…
Interesting properties of the partitions of a finite field $\mathbb F_q$ induced by the combination of involutions and trace maps are studied. The special features of involutions of the form $\frac{u}{z}$, $u$ being a fixed element of…
We obtain connection coefficients between $q$-binomial and $q$-trinomial coefficients. Using these, one can transform $q$-binomial identities into a $q$-trinomial identities and back again. To demonstrate the usefulness of this procedure we…
There is an intrinsic relationship between the molecular evolution in primordial period and the properties of genomes and proteomes of contemporary species. The genomic data may help us understand the driving force of evolution of life at…
We cast the $q$-rotor in the framework of Barnett-Pegg theory for rotation angle, whose underlying algebra is $SU_q(2)$. A new method to fix the deformation parameter from the theory is suggested. We test our ideas by fitting rotational…
We discuss the similarity of the degeneration structure of the genetic code with a pure number theoretic -- ``divisors code.'' The most interesting thing about our observation is not that there is a connection between number theory and the…
Generalized quasi-cyclic (GQC) codes with arbitrary lengths over the ring $\mathbb{F}_{q}+u\mathbb{F}_{q}$, where $u^2=0$, $q=p^n$, $n$ a positive integer and $p$ a prime number, are investigated. By the Chinese Remainder Theorem,…
A good feature representation is a determinant factor to achieve high performance for many machine learning algorithms in terms of classification. This is especially true for techniques that do not build complex internal representations of…
Following the approach by R. K\"otter and F. R. Kschischang, we study network codes as families of k-dimensional linear subspaces of a vector space F_q^n, q being a prime power and F_q the finite field with q elements. In particular,…
$q$-analogs of special functions, including hypergeometric functions, play a central role in mathematics and have numerous applications in physics. In the theory of probability, $q$-analogs of various probability distributions have been…