Related papers: Allosteric Regulation by a Critical Membrane
Biology stores information and computes at the molecular scale, yet the ways in which it does so are often distinct from human-engineered computers. Mapping biological computation onto architectures familiar to computer science remains an…
The class of random-cluster models is a unification of a variety of stochastic processes of significance for probability and statistical physics, including percolation, Ising, and Potts models; in addition, their study has impact on the…
We use linear stability analysis and hybrid lattice Boltzmann simulations to study the dynamical behaviour of an active nematic confined in a channel made of viscoelastic material. We find that the quiescent, ordered active nematic is…
We present the general theory of Ising transitions in isotropic elastic media with vanishing thermal expansion. By constructing a minimal model with appropriate spin-lattice couplings, we show that in two dimensions near a continuous…
The anchoring of nematic liquid crystals on surfaces with grafted liquid crystalline chain molecules is studied by computer simulations and within a mean field approach. The computer simulations show that a swollen layer of collectively…
Quantum critical (QC) phase transitions generally lead to the absence of quasiparticles. The resulting correlated quantum fluid, when thermally excited, displays rich universal dynamics. We establish non-perturbative constraints on the…
Understanding the mechanical instabilities of two-dimensional membranes has strong connection to the subjects of structure instabilities, morphology control and materials failures. In this work, we investigate the plastic mechanism…
The ordering of charges on half-filled hypercubic lattices is investigated numerically, where electroneutrality is ensured by background charges. This system is equivalent to the $s = 1/2$ Ising lattice model with antiferromagnetic $1/r$…
Finite systems may undergo first or second order phase transitions under not isovolumetric but isobaric condition. The `analyticity' of a finite-system partition function has been argued to imply universal values for isobaric critical…
Unlike their model membrane counterparts, biological membranes are richly decorated with a heterogeneous assembly of membrane proteins. These proteins are so tightly packed that their excluded area interactions can alter the free energy…
Modeling stochasticity in gene regulatory networks is an important and complex problem in molecular systems biology. To elucidate intrinsic noise, several modeling strategies such as the Gillespie algorithm have been used successfully. This…
We study an array of coupled optical cavities in presence of two-photon driving and dissipation. The system displays a critical behavior similar to that of a quantum Ising model at finite temperature. Using the corner-space renormalization…
The spatial structure of the cell is highly organized at all levels: from small complexes and assemblies, to local nano- and micro-clusters, to global, micrometer scales across and between cells. We suggest that this multiscale spatial cell…
Complex colloidal fluids, such as emulsions stabilized by complex shaped particles, play an important role in many industrial applications. However, understanding their physics requires a study at sufficiently large length scales while…
Among the properties that are common to complex systems, the presence of critical thresholds in the dynamics of the system is one of the most important. Recently, there has been interest in the universalities that occur in the behavior of…
We investigated the Ising model on a square lattice with ferro and antiferromagnetic interactions modulated by the quasiperiodic Octonacci sequence in both directions of the lattice. We have applied the Replica Exchange Monte Carlo…
In this paper we analyze metastability and nucleation in the context of the Kawasaki dynamics for the two-dimensional Ising lattice gas at very low temperature with periodic boundary conditions. Let $\beta>0$ be the inverse temperature and…
We study the indentation of a free-standing lipid membrane suspended over a nanopore on a hydrophobic substrate by means of molecular dynamics simulations. We find that in the course of indentation, the membrane bends at the point of…
Entropy is a central concept in physics, but can be challenging to calculate even for systems that are easily simulated. This is exacerbated out of equilibrium, where generally little is known about the distribution characterizing simulated…
We investigate proteins within heterogeneous cell membranes where non-equilibrium phenomena arises from spatial variations in concentration and temperature. We develop simulation methods building on non-equilibrium statistical mechanics to…