Related papers: Allosteric Regulation by a Critical Membrane
Many protein-protein interaction (PPI) networks take place in the fluid yet structured plasma membrane. Lipid domains, sometimes termed rafts, have been implicated in the functioning of various membrane-bound signaling processes. Here, we…
We study dimensional crossover in Ising systems at complex temperatures by comparing three types of system: the infinite isotropic 2D Ising model; the infinite anisotropic 2D Ising model; and Ising ladders with a finite number of legs. In…
We investigate the performance of neural networks in identifying critical behaviour in the 2D Ising model with next-to-nearest neighbour interactions. We train DNN and CNN based classifiers on the Ising model configurations with nearest…
Proteins are the workhorse molecules of the cell and perform their biological functions by binding to other molecules through physical contact. Protein function is then regulated through coupling of bindings on the protein (allosteric…
Using previous results from boundary conformal field theory and integrability, a phase diagram is derived for the 2 dimensional Ising model at its bulk tri-critical point as a function of boundary magnetic field and boundary spin-coupling…
The behavior of many magnetic and dielectric solids, and the more contemporary magnetic super-lattices, is governed by dipolar interactions. They are anisotropic and long-ranged, having varied consequences ranging from ground states with…
An investigation of the performance of the multilevel algorithm in the approach to criticality has been undertaken using the Ising model, performing simulations across a range of temperatures. Numerical results show that the performance of…
The two-dimensional (2D) random-bond Ising model has a novel multicritical point on the ferromagnetic to paramagnetic phase boundary. This random phase transition is one of the simplest examples of a 2D critical point occurring at both…
A general framework to describe a vast majority of biology-inspired systems is to model them as stochastic processes in which multiple couplings are in play at the same time. Molecular motors, chemical reaction networks, catalytic enzymes,…
Many cellular behaviors are regulated by gene regulation networks, kinetics of which is one of the main subjects in the study of systems biology. Because of the low number molecules in these reacting systems, stochastic effects are…
We study numerically the non-equilibrium critical properties of the Ising model defined on direct products of graphs, obtained from factor graphs without phase transition (Tc = 0). On this class of product graphs, the Ising model features a…
Cell plasma membranes display a dramatically rich structural complexity characterized by functional sub-wavelength domains with specific lipid and protein composition. Under favorable experimental conditions, patterned morphologies can also…
A fluctuating non-ideal fluid at its critical point is simulated with the Lattice Boltzmann method. It is demonstrated that the method, employing a Ginzburg-Landau free energy functional, correctly reproduces the static critical behavior…
Thermalized elastic membranes without distant self-avoidance are believed to undergo a crumpling transition when the microscopic bending stiffness is comparable to $kT$, the scale of thermal fluctuations. Most potential physical…
We study the dynamical behavior of a square lattice Ising model with exchange and dipolar interactions by means of Monte Carlo simulations. After a sudden quench to low temperatures we find that the system may undergo a coarsening process…
The partition functions for two-dimensional nearest neighbour Ising model in a non-zero magnetic field have been derived for finite square lattices with the help of graph theoretical procedures, show-bit algorithm, enumeration of…
We describe numerical simulations of the stochastic diffusion equation with a conserved charge. We focus on the dynamics in the vicinity of a critical point in the Ising universality class. The model we consider is expected to describe the…
For the first time the phenomenon of cellular structure coarsening are consistently analysed from the positions of kinetic, hydrodynamic and stochastodynamic theories of nonequilibrium statistical systems. Thereby micro-, meso- and…
Dynamics of Ising models is a much studied phenomenon and has emerged as a rich field of present-day research. An important dynamical feature commonly studied is the quenching phenomenon below the critical temperature. In this thesis we…
A new approach to the kinetic simulation of plasmas in complex geometries, based on the Particle-in- Cell (PIC) simulation method, is explored. In the two dimensional (2d) electrostatic version of our method, called the Arbitrary…