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Protein structure-based property prediction has emerged as a promising approach for various biological tasks, such as protein function prediction and sub-cellular location estimation. The existing methods highly rely on experimental protein…

Machine Learning · Computer Science 2023-10-20 Yufei Huang , Siyuan Li , Jin Su , Lirong Wu , Odin Zhang , Haitao Lin , Jingqi Qi , Zihan Liu , Zhangyang Gao , Yuyang Liu , Jiangbin Zheng , Stan. ZQ. Li

Deep neural networks have recently drawn considerable attention to build and evaluate artificial learning models for perceptual tasks. Here, we present a study on the performance of the deep learning models to deal with global optimization…

Neural and Evolutionary Computing · Computer Science 2020-12-18 Hojjat Rakhshani , Lhassane Idoumghar , Soheila Ghambari , Julien Lepagnot , Mathieu Brévilliers

Medical image quality assessment (MIQA) is essential for reliable medical image analysis. While deep learning has shown promise in this field, current models could be misled by spurious correlations learned from data and struggle with…

Computer Vision and Pattern Recognition · Computer Science 2024-10-11 Boyu Chen , Ameenat L. Solebo , Weiye Bao , Paul Taylor

Automated and robust portrait quality assessment (PQA) is of paramount importance in high-impact applications such as smartphone photography. This paper presents FHIQA, a learning-based approach to PQA that introduces a simple but effective…

Computer Vision and Pattern Recognition · Computer Science 2024-02-15 Nicolas Chahine , Sira Ferradans , Javier Vazquez-Corral , Jean Ponce

Figuring out small molecule binding sites in target proteins, in the resolution of either pocket or residue, is critical in many virtual and real drug-discovery scenarios. Since it is not always easy to find such binding sites based on…

Quantitative Methods · Quantitative Biology 2023-04-19 Daeseok Lee , Jeunghyun Byun , Bonggun Shin

We present a novel no-reference quality assessment metric, the image transferred point cloud quality assessment (IT-PCQA), for 3D point clouds. For quality assessment, deep neural network (DNN) has shown compelling performance on…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 Qi Yang , Yipeng Liu , Siheng Chen , Yiling Xu , Jun Sun

Action quality assessment (AQA) is critical for evaluating athletic performance, informing training strategies, and ensuring safety in competitive sports. However, existing deep learning approaches often operate as black boxes and are…

Computer Vision and Pattern Recognition · Computer Science 2025-04-01 Ruisheng Han , Kanglei Zhou , Amir Atapour-Abarghouei , Xiaohui Liang , Hubert P. H. Shum

Question Answering (QA) is a longstanding challenge in natural language processing. Existing QA works mostly focus on specific question types, knowledge domains, or reasoning skills. The specialty in QA research hinders systems from…

Computation and Language · Computer Science 2022-12-12 Wanjun Zhong , Yifan Gao , Ning Ding , Yujia Qin , Zhiyuan Liu , Ming Zhou , Jiahai Wang , Jian Yin , Nan Duan

Image quality assessment(IQA) is of increasing importance for image-based applications. Its purpose is to establish a model that can replace humans for accurately evaluating image quality. According to whether the reference image is…

Image and Video Processing · Electrical Eng. & Systems 2022-01-12 Lanjiang Wang

Video quality assessment (VQA) is a challenging problem due to the numerous factors that can affect the perceptual quality of a video, \eg, content attractiveness, distortion type, motion pattern, and level. However, annotating the Mean…

Computer Vision and Pattern Recognition · Computer Science 2024-05-29 Kun Yuan , Hongbo Liu , Mading Li , Muyi Sun , Ming Sun , Jiachao Gong , Jinhua Hao , Chao Zhou , Yansong Tang

The idea of this project is to study the protein structure and sequence relationship using the hidden markov model and artificial neural network. In this context we have assumed two hidden markov models. In first model we have taken protein…

Machine Learning · Computer Science 2012-06-18 Saurabh Sarkar , Prateek Malhotra , Virender Guman

Deep neural networks have been critical in the task of Visual Question Answering (VQA), with research traditionally focused on improving model accuracy. Recently, however, there has been a trend towards evaluating the robustness of these…

Computer Vision and Pattern Recognition · Computer Science 2023-04-07 Jia-Hong Huang , Modar Alfadly , Bernard Ghanem , Marcel Worring

Accurately measuring protein-RNA binding affinity is crucial in many biological processes and drug design. Previous computational methods for protein-RNA binding affinity prediction rely on either sequence or structure features, unable to…

Biomolecules · Quantitative Biology 2025-01-06 Rong Han , Xiaohong Liu , Tong Pan , Jing Xu , Xiaoyu Wang , Wuyang Lan , Zhenyu Li , Zixuan Wang , Jiangning Song , Guangyu Wang , Ting Chen

Numerous cellular functions rely on protein$\unicode{x2013}$protein interactions. Efforts to comprehensively characterize them remain challenged however by the diversity of molecular recognition mechanisms employed within the proteome. Deep…

Biomolecules · Quantitative Biology 2023-12-08 Julia R. Rogers , Gergő Nikolényi , Mohammed AlQuraishi

Missing values are a major challenge in most data science projects working on real data. To avoid losing valuable information, imputation methods are used to fill in missing values with estimates, allowing the preservation of samples or…

Machine Learning · Computer Science 2024-07-17 Pedro Pons-Suñer , Laura Arnal , J. Ramón Navarro-Cerdán , François Signol

Recently, image quality assessment (IQA) has achieved remarkable progress with the success of deep learning. However, the strict pre-condition of full-reference (FR) methods has limited its application in real scenarios. And the…

Image and Video Processing · Electrical Eng. & Systems 2021-09-17 Jingyu Guo , Wei Wang , Wenming Yang , Qingmin Liao , Jie Zhou

Physical rehabilitation programs frequently begin with a brief stay in the hospital and continue with home-based rehabilitation. Lack of feedback on exercise correctness is a significant issue in home-based rehabilitation. Automated…

Computer Vision and Pattern Recognition · Computer Science 2022-04-19 Aditya Kanade , Mansi Sharma , Manivannan Muniyandi

Video Quality Assessment (VQA) aims to evaluate video quality based on perceptual distortions and human preferences. Despite the promising performance of existing methods using Convolutional Neural Networks (CNNs) and Vision Transformers…

Computer Vision and Pattern Recognition · Computer Science 2025-05-07 Wei-Ting Chen , Yu-Jiet Vong , Yi-Tsung Lee , Sy-Yen Kuo , Qiang Gao , Sizhuo Ma , Jian Wang

Intrinsically disordered regions (IDRs) play central roles in cellular function, yet remain poorly evaluated by existing protein structure prediction benchmarks. Current evaluations largely focus on well-folded domains, overlooking three…

Biomolecules · Quantitative Biology 2026-02-11 Xinyue Zeng , Tuo Wang , Adithya Kulkarni , Alexander Lu , Alexandra Ni , Phoebe Xing , Junhan Zhao , Siwei Chen , Dawei Zhou

A large number of protein sequences are becoming available through the application of novel high-throughput sequencing technologies. Experimental functional characterization of these proteins is time-consuming and expensive, and is often…

Genomics · Quantitative Biology 2017-09-28 Maxat Kulmanov , Mohammed Asif Khan , Robert Hoehndorf