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Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein engineering. However, training these models from scratch…

Machine Learning · Computer Science 2024-12-19 Shivasankaran Vanaja Pandi , Bharath Ramsundar

Printed and flexible electronics (PFE) have emerged as the ubiquitous solution for application domains at the extreme edge, where the demands for low manufacturing and operational cost cannot be met by silicon-based computing. Built on…

Hardware Architecture · Computer Science 2025-05-02 Mehdi B. Tahoori , Emre Ozer , Georgios Zervakis , Konstantinos Balaskas , Priyanjana Pal

Designing controllers for complex industrial electronic systems is challenging due to nonlinearities and parameter uncertainties, and traditional methods are often slow and costly. To address this, we propose a novel autonomous design…

Systems and Control · Electrical Eng. & Systems 2025-07-23 Chenggang Cui , Jiaming Liu , Peifeng Hui , Pengfeng Lin , Chuanlin Zhang

Recently there have been many advances in research on language modeling of source code. Applications range from code suggestion and completion to code summarization. However, complete program synthesis of industry-grade programming…

Artificial Intelligence · Computer Science 2021-09-07 Sander de Bruin , Vadim Liventsev , Milan Petković

Machine learning (ML) workloads launch hundreds to thousands of short-running GPU kernels per iteration. With GPU compute throughput growing rapidly, CPU-side launch latency of kernels is emerging as a bottleneck. CUDA Graphs promise to…

Machine Learning · Computer Science 2025-12-24 Abhishek Ghosh , Ajay Nayak , Ashish Panwar , Arkaprava Basu

Predicting the effect of mutations in proteins is one of the most critical challenges in protein engineering; by knowing the effect a substitution of one (or several) residues in the protein's sequence has on its overall properties, could…

Computational Engineering, Finance, and Science · Computer Science 2020-10-08 David Medina-Ortiz , Sebastian Contreras , Juan Amado-Hinojosa , Jorge Torres-Almonacid , Juan A. Asenjo , Marcelo Navarrete , Álvaro Olivera-Nappa

In this work, we present SynTable, a unified and flexible Python-based dataset generator built using NVIDIA's Isaac Sim Replicator Composer for generating high-quality synthetic datasets for unseen object amodal instance segmentation of…

Computer Vision and Pattern Recognition · Computer Science 2025-05-30 Zhili Ng , Haozhe Wang , Zhengshen Zhang , Francis Tay Eng Hock , Marcelo H. Ang

Active learning (AL) is a sub-field of ML focused on the development of methods to iteratively and economically acquire data by strategically querying new data points that are the most useful for a particular task. Here, we introduce…

Development of scientific software involves tradeoffs between ease of use, generality, and performance. We describe the design of a general hyperbolic PDE solver that can be operated with the convenience of MATLAB yet achieves efficiency…

Electronic quizzes are used extensively for summative and formative assessment. Current Learning Management Systems (LMS) allow instructors to create quizzes through a Graphical User Interface. Despite having a smooth learning curve,…

Computers and Society · Computer Science 2020-09-09 Carlos Andujar

Transformer-based autoregressive models excel in data generation but are inherently constrained by their reliance on discretized tokens, which limits their ability to represent continuous values with high precision. We analyze the…

Machine Learning · Computer Science 2026-01-12 Yeonsang Shin , Insoo Kim , Bongkeun Kim , Keonwoo Bae , Bohyung Han

In order to automate AI research we introduce a full, end-to-end framework, OMEGA: Optimizing Machine learning by Evaluating Generated Algorithms, that starts at idea generation and ends with executable code. Our system combines structured…

Artificial Intelligence · Computer Science 2026-04-30 Jeremy Nixon , Annika Singh

We introduce an open-source Python framework for generating synthetic ECG image datasets to advance critical deep learning-based tasks in ECG analysis, including ECG digitization, lead region and lead name detection, and pixel-level…

Signal Processing · Electrical Eng. & Systems 2026-04-22 Masoud Rahimi , Reza Karbasi , Abdol-Hossein Vahabie

Recently, many studies have increasingly explored the use of large language models (LLMs) to generate research ideas and scientific hypotheses. However, real-world research and development often require solving complex, interdisciplinary…

Computation and Language · Computer Science 2025-01-03 Hikari Tomita , Nobuhiro Nakamura , Shoichi Ishida , Toshio Kamiya , Kei Terayama

pyscreener is a Python library that seeks to alleviate the challenges of large-scale structure-based design using computational docking. It provides a simple and uniform interface that is agnostic to the backend docking engine with which to…

Quantitative Methods · Quantitative Biology 2022-05-05 David E. Graff , Connor W. Coley

Entity linking is a standard component in modern retrieval system that is often performed by third-party toolkits. Despite the plethora of open source options, it is difficult to find a single system that has a modular architecture where…

Information Retrieval · Computer Science 2020-06-04 Johannes M. van Hulst , Faegheh Hasibi , Koen Dercksen , Krisztian Balog , Arjen P. de Vries

Electronic Design Automation (EDA) tools are software applications used by engineers in the design, development, simulation, and verification of electronic systems and integrated circuits. These tools typically process specifications…

Hardware Architecture · Computer Science 2024-06-12 Rafael Sumitani , João Victor Amorim , Augusto Mafra , Mirlaine Crepalde , Fernando Magno Quintão Pereira

In the last few years there have been important advancements in generative models with the two dominant approaches being Generative Adversarial Networks (GANs) and Variational Autoencoders (VAEs). However, standard Autoencoders (AEs) and…

Computer Vision and Pattern Recognition · Computer Science 2019-07-26 Massimiliano Patacchiola , Patrick Fox-Roberts , Edward Rosten

Testing Electronic Design Automation (EDA) tools rely on benchmarks -- designs written in Hardware Description Languages (HDLs) such as Verilog, SystemVerilog, or VHDL. Although collections of benchmarks for these languages exist, they are…

Recent years have witnessed the growing popularity of domain-specific accelerators (DSAs), such as Google's TPUs, for accelerating various applications such as deep learning, search, autonomous driving, etc. To facilitate DSA designs,…

Machine Learning · Computer Science 2023-06-06 Yunsheng Bai , Atefeh Sohrabizadeh , Zongyue Qin , Ziniu Hu , Yizhou Sun , Jason Cong
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