Related papers: Counting Contours on Trees
The reconstruction of large phylogenetic trees from data that violates clocklike evolution (or as a supertree constructed from any m input trees) raises a difficult question for biologists - how can one assign relative dates to the vertices…
The terminal Wiener index of a tree is the sum of distances for all pairs of pendent vertices, which recently arises in the study of phylogenetic tree reconstruction and the neighborhood of trees. This paper presents a sharp upper and lower…
We enumerate complex curves on toric surfaces of any given degree and genus, having a single cusp and nodes as their singularities, and matching appropriately many point constraints. The solution is obtained via tropical enumerative…
We study methods for drawing trees with perfect angular resolution, i.e., with angles at each node v equal to 2{\pi}/d(v). We show: 1. Any unordered tree has a crossing-free straight-line drawing with perfect angular resolution and…
We describe all the trees with the property that the corresponding edge ideal of the square of the tree has a linear resolution. As a consequence, we give a complete characterization of those trees $T$ for which the square is co-chordal,…
In this work we define a novel edit distance for trees considered with some abstract weights on the edges. The metric is driven by the idea of considering trees as topological summaries in the context of persistence and topological data…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
Let $\mathcal{T}^{(p)}_n$ be the set of $p$-ary labeled trees on $\{1,2,\dots,n\}$. A maximal decreasing subtree of an $p$-ary labeled tree is defined by the maximal $p$-ary subtree from the root with all edges being decreasing. In this…
Species tree estimation is a complex problem, due to the fact that different parts of the genome can have different evolutionary histories than the genome itself. One of the causes for this discord is incomplete lineage sorting (also called…
We construct the ordinary irreducible representations of the group of automorphisms of a finite rooted tree and we get a natural parametrization of them. To achieve this goals, we introduce and study the combinatorics of tree compositions,…
Trees are partial orders in which every element has a linearly ordered set of predecessors. Here we initiate the exploration of the structural theory of trees with the study of different notions of \emph{branching in trees} and of…
We study minimal vertex covers of trees. Contrarily to the number $N_{vc}(A)$ of minimal vertex covers of the tree $A$, $\log N_{vc}(A)$ is a self-averaging quantity. We show that, for large sizes $n$, $\lim_{n\to +\infty} <\log…
In graph theory, a tree is one of the more popular families of graphs with a wide range of applications in computer science as well as many other related fields. While there are several distance measures over the set of all trees, we…
We apply dimensional analysis with Buckinghams "Pi" theorem to estimate the volume of wood in a tree stem, given the tree's height and diameter. We use Meyer's (1953) data on 31 cherry trees from the Allegheny National forest as the main…
A genus one labeled circle tree is a tree with its vertices on a circle, such that together they can be embedded in a surface of genus one, but not of genus zero. We define an e-reduction process whereby a special type of subtree, called an…
A rooted tree is balanced if the degree of a vertex depends only on its distance to the root. In this paper we determine the sharp threshold for the appearance of a large family of balanced spanning trees in the random geometric graph…
Given a tree of weighted vertices, it is sometimes possible to break the tree into two equally-weighted subtrees within an allowable error. We give a fast algorithm that finds an edge which breaks the tree into equal-weight components or…
Furstenberg-Weiss have extended Szemer\'edi's theorem on arithmetic progressions to trees by showing that a large subset of the tree contains arbitrarily long arithmetic subtrees. We study higher dimensional versions that analogously extend…
We study the problem of enumerating Braess edges for Kemeny's constant in trees. We obtain bounds and asympotic results for the number of Braess edges in some families of trees.
Let $T$ be an $n$-node tree of maximum degree 4, and let $P$ be a set of $n$ points in the plane with no two points on the same horizontal or vertical line. It is an open question whether $T$ always has a planar drawing on $P$ such that…