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In open data sets of functional magnetic resonance imaging (fMRI), the heterogeneity of the data is typically attributed to a combination of factors, including differences in scanning procedures, the presence of confounding effects, and…

Machine Learning · Computer Science 2026-04-17 Xin Wen , Shijie Guo , Wenbo Ning , Rui Cao , Yan Niu , Bin Wan , Peng Wei , Xiaobo Liu , Jie Xiang

The brain is organized in a modular way, serving multiple functionalities. This multiplicity requires that both positive (e.g. excitatory, phase-coherent) and negative (e.g. inhibitory, phase-opposing) interactions take place across brain…

Neurons and Cognition · Quantitative Biology 2019-07-29 Assaf Almog , Ori Roethler , Renate Buijink , Stephan Michel , Johanna H Meijer , Jos H. T. Rohling , Diego Garlaschelli

Wide-field calcium imaging (WFCI) that records neural calcium dynamics allows for identification of functional brain networks (FBNs) in mice that express genetically encoded calcium indicators. Estimating FBNs from WFCI data is commonly…

Image and Video Processing · Electrical Eng. & Systems 2024-05-31 Xiaohui Zhang , Eric C Landsness , Lindsey M Brier , Wei Chen , Michelle J. Tang , Hanyang Miao , Jin-Moo Lee , Mark A. Anastasio , Joseph P. Culver

Many efforts have been devoted to develop alternative methods to traditional vector quantization in image domain such as sparse coding and soft-assignment. These approaches can be split into a dictionary learning phase and a feature…

Computer Vision and Pattern Recognition · Computer Science 2013-09-03 Xiaojiang Peng , Qiang Peng , Yu Qiao , Junzhou Chen , Mehtab Afzal

Spatially-sparse predictors are good models for brain decoding: they give accurate predictions and their weight maps are interpretable as they focus on a small number of regions. However, the state of the art, based on total variation or…

Machine Learning · Statistics 2016-06-22 Gaël Varoquaux , Matthieu Kowalski , Bertrand Thirion

In daily life, we encounter diverse external stimuli, such as images, sounds, and videos. As research in multimodal stimuli and neuroscience advances, fMRI-based brain decoding has become a key tool for understanding brain perception and…

Computer Vision and Pattern Recognition · Computer Science 2025-03-21 Pengyu Liu , Guohua Dong , Dan Guo , Kun Li , Fengling Li , Xun Yang , Meng Wang , Xiaomin Ying

Sparse linear regression methods including the well-known LASSO and the Dantzig selector have become ubiquitous in the engineering practice, including in medical imaging. Among other tasks, they have been successfully applied for the…

Signal Processing · Electrical Eng. & Systems 2023-01-03 Anna Pidnebesna , Iveta Fajnerova , Jiri Horacek , Jaroslav Hlinka

Neural networks (NN) perform well in diverse tasks, but sometimes produce nonsensical results to humans. Most NN models "solely" learn from (input, output) pairs, occasionally conflicting with human knowledge. Many studies indicate…

Machine Learning · Computer Science 2024-08-22 Mooho Song , Jay-Yoon Lee

Blind source separation (BSS) is a key technique in array processing and data analysis, aiming to recover unknown sources from observed mixtures without knowledge of the mixing matrix. Classical independent component analysis (ICA) methods…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Zhongxuan Li

Attention Deficit Hyperactive Disorder (ADHD) is a common behavioral problem affecting children. In this work, we investigate the automatic classification of ADHD subjects using the resting state Functional Magnetic Resonance Imaging (fMRI)…

Neurons and Cognition · Quantitative Biology 2023-06-16 Soumyabrata Dey , Ravishankar Rao , Mubarak Shah

Understanding how novices reason about coding at a neurological level has implications for training the next generation of software engineers. In recent years, medical imaging has been increasingly employed to investigate patterns of neural…

Software Engineering · Computer Science 2021-03-09 Madeline Endres , Zachary Karas , Xiaosu Hu , Ioulia Kovelman , Westley Weimer

The development of algorithms to accurately decode neural information has long been a research focus in the field of neuroscience. Brain decoding typically involves training machine learning models to map neural data onto a preestablished…

Previous studies have shown that it is possible to map brain activation data of subjects viewing images onto the feature representation space of not only vision models (modality-specific decoding) but also language models (cross-modal…

Computer Vision and Pattern Recognition · Computer Science 2024-03-19 Mitja Nikolaus , Milad Mozafari , Nicholas Asher , Leila Reddy , Rufin VanRullen

We investigate the sparse functional identification of complex cells and the decoding of visual stimuli encoded by an ensemble of complex cells. The reconstruction algorithm of both temporal and spatio-temporal stimuli is formulated as a…

Neurons and Cognition · Quantitative Biology 2017-06-20 Aurel A. Lazar , Nikul H. Ukani , Yiyin Zhou

Integrating the brain structural and functional connectivity features is of great significance in both exploring brain science and analyzing cognitive impairment clinically. However, it remains a challenge to effectively fuse structural and…

Neurons and Cognition · Quantitative Biology 2023-05-25 Qiankun Zuo , Baiying Lei , Ning Zhong , Yi Pan , Shuqiang Wang

Neuromorphic computing, inspired by nervous systems, revolutionizes information processing with its focus on efficiency and low power consumption. Using sparse coding, this paradigm enhances processing efficiency, which is crucial for edge…

Sound · Computer Science 2025-09-01 Soufiyan Bahadi , Eric Plourde , Jean Rouat

It has become increasingly popular to study the brain as a network due to the realization that functionality cannot be explained exclusively by independent activation of specialized regions. Instead, across a large spectrum of behaviors,…

Neurons and Cognition · Quantitative Biology 2014-07-22 Petko Bogdanov , Nazli Dereli , Danielle S. Bassett , Scott T. Grafton , Ambuj K. Singh

The field of neuroimaging has truly become data rich, and novel analytical methods capable of gleaning meaningful information from large stores of imaging data are in high demand. Those methods that might also be applicable on the level of…

Different brain imaging modalities offer unique insights into brain function and structure. Combining them enhances our understanding of neural mechanisms. Prior multimodal studies fusing functional MRI (fMRI) and structural MRI (sMRI) have…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Oktay Agcaoglu , Rogers F. Silva , Deniz Alacam , Sergey Plis , Tulay Adali , Vince Calhoun

Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions using big volumes of neuroimaging data. Functional magnetic resonance imaging (fMRI) can produce these…

Neurons and Cognition · Quantitative Biology 2014-09-24 Enzo Tagliazucchi , Helmut Laufs , Dante R. Chialvo