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Network ecology is a rising field of quantitative biology representing ecosystems as complex networks. A suitable example is parasite spreading: several parasites may be transmitted among their hosts through different mechanisms, each one…

Quantitative Methods · Quantitative Biology 2016-09-12 Massimo Stella , Cecilia S. Andreazzi , Sanja Selakovic , Alireza Goudarzi , Alberto Antonioni

A current challenge for disease modeling and public health is understanding pathogen dynamics across scales since their ecology and evolution ultimately operate on several coupled scales. This is particularly true for vector-borne diseases,…

Populations and Evolution · Quantitative Biology 2019-12-19 Hayriye Gulbudak

We formulate a compartmental model for the propagation of a respiratory disease in a patchy environment. The patches are connected through the mobility of individuals, and we assume that disease transmission and recovery are possible during…

Populations and Evolution · Quantitative Biology 2021-10-11 Indrajit Ghosh , Sk Shahid Nadim , Soumyendu Raha , Debnath Pal

Network epidemiology often assumes that the relationships defining the social network of a population are static. The dynamics of relationships is only taken indirectly into account, by assuming that the relevant information to study…

Populations and Evolution · Quantitative Biology 2010-04-09 Sebastian Risau-Gusman

In this paper, we study the global dynamics of epidemic network models with standard incidence or mass-action transmission mechanism, when the dispersal of either the susceptible or the infected people is controlled. The connectivity matrix…

Analysis of PDEs · Mathematics 2023-11-14 Rachidi Salako , Yixiang Wu

The use of model experimental systems and mathematical models is important to further understanding of infectious disease dynamics and strategize disease mitigation. Gyrodactylids are helminth ectoparasites of teleost fish which have many…

Populations and Evolution · Quantitative Biology 2019-08-30 Christina P. Tadiri , Jude D. Kong , Gregor F. Fussmann , Marilyn E. Scott , Hao Wang

Nowadays, evidence is mounting that the race of living organisms for adaptation to the chemicals synthesized by their neighbours may drive community structures. Particularly, some bacterial infections and plant invasions disruptive of the…

Populations and Evolution · Quantitative Biology 2020-10-14 Sylvestre Aureliano Carvalho , Marcelo Lobato Martins

We define and examine a model of epidemic propagation for a virus such as Hepatitis C (with HIV co-infection) on a network of networks, namely the network of French urban areas. One network level is that of the individual interactions…

Physics and Society · Physics 2017-05-24 Arnaud Nucit , Julien Randon-Furling

Hepatitis C is a viral infection that appears as a result of the Hepatitis C Virus (HCV), and it has been recognized as the main reason for liver diseases. HCV incidence is growing as an important issue in the epidemiology of infectious…

Populations and Evolution · Quantitative Biology 2020-07-28 Javad Khodaei-Mehr , Samaneh Tangestanizadeh , Mojtaba Sharifi , Ramin Vatankhah , Mohammad Eghtesad

The precise mechanism that causes HIV infection to progress to AIDS is still unknown. This paper presents a mathematical model which is able to predict the entire trajectory of the HIV/AIDS dynamics, then a possible explanation for this…

Cell Behavior · Quantitative Biology 2015-03-19 Esteban A. Hernandez-Vargas , Dhagash Mehta , Richard H. Middleton

Mechanisms of immunity, and of the host-pathogen interactions in general are among the most fundamental problems of medicine, ecology, and evolution studies. Here, we present a microscopic, protein-level, sequence-based model of immune…

Biomolecules · Quantitative Biology 2007-11-22 Muyoung Heo , Konstantin B. Zeldovich , Eugene I. Shakhnovich

We study the stability properties of a susceptible-infected-susceptible (SIS) diffusion model, so-called the $n$-intertwined Markov model, over arbitrary directed network topologies. As in the majority of the work on infection spread…

Systems and Control · Computer Science 2015-02-23 Ali Khanafer , Tamer Başar , Bahman Gharesifard

Previous work has shown that species interacting in an ecosystem and actors transacting in an economic context may have notable similarities in behavior. However, the specific mechanism that may underlie similarities in nature and human…

Physics and Society · Physics 2011-10-04 Serguei Saavedra , Felix Reed-Tsochas , Brian Uzzi

Understanding the behaviors of ecological systems is challenging given their multi-faceted complexity. To proceed, theoretical models such as Lotka-Volterra dynamics with random interactions have been investigated by the dynamical…

Biological Physics · Physics 2024-11-13 Jong Il Park , Deok-Sun Lee , Sang Hoon Lee , Hye Jin Park

Several pathogens use evolvability as a survival strategy against acquired immunity of the host. Despite their high variability in time, some of them exhibit quite low variability within the population at any given time, a somehow…

Populations and Evolution · Quantitative Biology 2011-08-31 Ginestra Bianconi , Davide Fichera , Silvio Franz , Luca Peliti

The purpose of this study is to leverage modern technology (such as mobile or web apps in Beckman et al. (2014)) to enrich epidemiology data and infer the transmission of disease. Homogeneity related research on population level has been…

Applications · Statistics 2015-09-02 Kai Fan , Allison E. Aiello , Katherine A. Heller

Chronic viral infections can persist in an infected person for decades. From the perspective of the virus, a single infection can span thousands of generations, leading to a highly diverse population of viruses with its own complex…

Populations and Evolution · Quantitative Biology 2023-05-30 Dmitry Gromov , Ethan O. Romero-Severson

We introduce and analyze a within-host dynamical model of the coevolution between rapidly mutating pathogens and the adaptive immune response. Pathogen mutation and a homeostatic constraint on lymphocytes both play a role in allowing the…

Populations and Evolution · Quantitative Biology 2014-08-06 Kimberly J. Schlesinger , Sean P. Stromberg , Jean M. Carlson

Dynamic models have been successfully used in producing estimates of HIV epidemics at national level, due to their epidemiological nature and their ability to simultaneously estimate prevalence, incidence, and mortality rates. Recently, HIV…

Methodology · Statistics 2016-02-19 Le Bao , Ben Sheng , Xiaoyue Niu , Yuan Tang , Tim Brown , Peter D. Ghys , Jeff W. Eaton

A new detailed mathematical model for dynamics of immune response to hepatitis B is proposed, which takes into account contributions from innate and adaptive immune responses, as well as cytokines. Stability analysis of different steady…

Populations and Evolution · Quantitative Biology 2018-05-16 F. Fatehi Chenar , Y. N. Kyrychko , K. B. Blyuss