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Accelerating magnetic resonance image (MRI) reconstruction process is a challenging ill-posed inverse problem due to the excessive under-sampling operation in k-space. In this paper, we propose a recurrent transformer model, namely…

Image and Video Processing · Electrical Eng. & Systems 2022-01-31 Pengfei Guo , Yiqun Mei , Jinyuan Zhou , Shanshan Jiang , Vishal M. Patel

Metabolism plays a central role in cell physiology because it provides the molecular machinery for growth. At the genome-scale, metabolism is made up of thousands of reactions interacting with one another. Untangling this complexity is key…

Molecular Networks · Quantitative Biology 2020-12-21 Varshit Dusad , Denise Thiel , Mauricio Barahona , Hector C. Keun , Diego A. Oyarzún

Animals are able to discover the topological map (graph) of surrounding environment, which will be used for navigation. Inspired by this biological phenomenon, researchers have recently proposed to generate graph representation for Markov…

Machine Learning · Computer Science 2020-06-24 Zhao-Heng Yin , Wu-Jun Li

Reconstruction of gene regulatory networks or 'reverse-engineering' is a process of identifying gene interaction networks from experimental microarray gene expression profile through computation techniques. In this paper, we tried to…

Computational Engineering, Finance, and Science · Computer Science 2014-08-25 Khalid Raza , Rafat Parveen

We present a step towards the metabolome-wide computational inference of cellular metabolic reaction networks from metabolic profiling data, such as mass spectrometry. The reconstruction is based on identification of irreducible statistical…

Quantitative Methods · Quantitative Biology 2011-06-02 Pradeep Bandaru , Mukesh Bansal , Ilya Nemenman

Online user studies of visualizations, visual encodings, and interaction techniques are ubiquitous in visualization research. Yet, designing, conducting, and analyzing studies effectively is still a major burden. Although various packages…

This paper introduces a novel pipeline to reconstruct the geometry of interacting multi-person in clothing on a globally coherent scene space from a single image. The main challenge arises from the occlusion: a part of a human body is not…

Computer Vision and Pattern Recognition · Computer Science 2024-04-03 Junuk Cha , Hansol Lee , Jaewon Kim , Nhat Nguyen Bao Truong , Jae Shin Yoon , Seungryul Baek

The metabolism of an organism is regulated at the cellular level, yet is strongly influenced by its environment. The precise metabolomic study of living organisms is currently hampered by measurement sensitivity: most metabolomic…

Quantitative Methods · Quantitative Biology 2017-07-28 Jan G. Korvink , Vlad Badilita , Lorenzo Bordonali , Mazin Jouda , Dario Mager , Neil MacKinnon

Generalizable rendering of an animatable human avatar from sparse inputs relies on data priors and inductive biases extracted from training on large data to avoid scene-specific optimization and to enable fast reconstruction. This raises…

Computer Vision and Pattern Recognition · Computer Science 2025-02-14 Jing Wen , Alexander G. Schwing , Shenlong Wang

Humans constantly interact with their surroundings. Existing end-to-end multi-person human mesh recovery methods, typically based on the DETR framework, capture inter-human relationships through self-attention across all human queries.…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Kaili Zheng , Kaiwen Wang , Xun Zhu , Chenyi Guo , Ji Wu

Understanding human mobility is essential for the development of smart cities and social behavior research. Human mobility models may be used in numerous applications, including pandemic control, urban planning, and traffic management. The…

Social and Information Networks · Computer Science 2022-09-09 Yisheng Alison Zheng , Amani Abusafia , Abdallah Lakhdari , Shing Tai Tony Lui , Athman Bouguettaya

In genome-scale constraint-based metabolic models, gene deletion strategies are essential for achieving growth-coupled production, where cell growth and target metabolite synthesis occur simultaneously. Despite the inherently networked…

Quantitative Methods · Quantitative Biology 2026-04-10 Ziwei Yang , Takeyuki Tamura

Motivation: Cell-biological processes are regulated through a complex network of interactions between genes and their products. The processes, their activating conditions, and the associated transcriptional responses are often unknown.…

Molecular Networks · Quantitative Biology 2012-02-03 Leo Lahti , Juha E. A. Knuuttila , Samuel Kaski

We present CogniMap3D, a bioinspired framework for dynamic 3D scene understanding and reconstruction that emulates human cognitive processes. Our approach maintains a persistent memory bank of static scenes, enabling efficient spatial…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Feiran Wang , Junyi Wu , Dawen Cai , Yuan Hong , Yan Yan

Monitoring dietary habits is crucial for preventing health risks associated with overeating and undereating, including obesity, diabetes, and cardiovascular diseases. Traditional methods for tracking food intake rely on self-reported data…

Computer Vision and Pattern Recognition · Computer Science 2025-05-02 Wallace Lee , YuHao Chen

Machine learning and many of its applications are considered hard to approach due to their complexity and lack of transparency. One mission of human-centric machine learning is to improve algorithm transparency and user satisfaction while…

Human-Computer Interaction · Computer Science 2019-10-25 Zhiwei Han , Thomas Weber , Stefan Matthes , Yuanting Liu , Hao Shen

Medical imaging is an invaluable resource in medicine as it enables to peer inside the human body and provides scientists and physicians with a wealth of information indispensable for understanding, modelling, diagnosis, and treatment of…

Image and Video Processing · Electrical Eng. & Systems 2022-08-25 Hanene Ben Yedder , Ben Cardoen , Ghassan Hamarneh

In autonomous driving applications, accurate and efficient road surface reconstruction is paramount. This paper introduces RoMe, a novel framework designed for the robust reconstruction of large-scale road surfaces. Leveraging a unique mesh…

Computer Vision and Pattern Recognition · Computer Science 2024-06-24 Ruohong Mei , Wei Sui , Jiaxin Zhang , Xue Qin , Gang Wang , Tao Peng , Cong Yang

We present an end-to-end virtual try-on pipeline, that can fit different clothes on a personalized 3-D human model, reconstructed using a single RGB image. Our main idea is to construct an animatable 3-D human model and try-on different…

Computer Vision and Pattern Recognition · Computer Science 2022-10-18 Gayal Kuruppu , Bumuthu Dilshan , Shehan Samarasinghe , Nipuna Madhushan , Ranga Rodrigo

Swift and accurate blood smear analysis is an effective diagnostic method for leukemia and other hematological malignancies. However, manual leukocyte count and morphological evaluation using a microscope is time-consuming and prone to…

Computer Vision and Pattern Recognition · Computer Science 2024-10-22 Chandravardhan Singh Raghaw , Arnav Sharma , Shubhi Bansal , Mohammad Zia Ur Rehman , Nagendra Kumar