Related papers: Dynamic index and LZ factorization in compressed s…
We introduce the first grammar-compressed representation of a sequence that supports searches in time that depends only logarithmically on the size of the grammar. Given a text $T[1..u]$ that is represented by a (context-free) grammar of…
We show that the compressed suffix array and the compressed suffix tree for a string of length $n$ over an integer alphabet of size $\sigma\leq n$ can both be built in $O(n)$ (randomized) time using only $O(n\log\sigma)$ bits of working…
Converting a compressed format of a string into another compressed format without an explicit decompression is one of the central research topics in string processing. We discuss the problem of converting the run-length Burrows-Wheeler…
In this work we have calculated the dynamic critical exponent $z$ for 2-, 3- and 4-dimensional Ising models using the Wolff's algorithm through dynamic finite size scaling. We have studied time evolution of the average cluster size, the…
We consider the dynamic range minimum problem on the ultra-wide word RAM model of computation. This model extends the classic $w$-bit word RAM model with special ultrawords of length $w^2$ bits that support standard arithmetic and boolean…
We present a spatially efficient decomposition of matrices and arbitrary-order tensors as linear combinations of tensor products of $\{-1, 1\}$-valued vectors. For any matrix $A \in \mathbb{R}^{m \times n}$, $$A - R_w = S_w C_w T_w^\top =…
Unlike in statistical compression, where Shannon's entropy is a definitive lower bound, no such clear measure exists for the compressibility of repetitive sequences. Since statistical entropy does not capture repetitiveness, ad-hoc measures…
We consider the problem of maintaining a collection of strings while efficiently supporting splits and concatenations on them, as well as comparing two substrings, and computing the longest common prefix between two suffixes. This problem…
The suffix array and the suffix tree are the two most fundamental data structures for string processing. For a length-$n$ text, however, they use $\Theta(n \log n)$ bits of space, which is often too costly. To address this, Grossi and…
We present an algorithm that computes the Lempel-Ziv decomposition in $O(n(\log\sigma + \log\log n))$ time and $n\log\sigma + \epsilon n$ bits of space, where $\epsilon$ is a constant rational parameter, $n$ is the length of the input…
Dynamic dictionary-based compression schemes are the most daily used data compression schemes since they appeared in the foundational papers of Ziv and Lempel in 1977, commonly referred to as LZ77. Their work is the base of Deflate, gZip,…
Given a DNF formula on n variables, the two natural size measures are the number of terms or size s(f), and the maximum width of a term w(f). It is folklore that short DNF formulas can be made narrow. We prove a converse, showing that…
Packing several characters into one computer word is a simple and natural way to compress the representation of a string and to speed up its processing. Exploiting this idea, we propose an index for a packed string, based on a {\em sparse…
Today there are many universal compression algorithms, but in most cases is for specific data better using specific algorithm - JPEG for images, MPEG for movies, etc. For textual documents there are special methods based on PPM algorithm or…
In a dynamic retrieval system, documents must be ingested as they arrive, and be immediately findable by queries. Our purpose in this paper is to describe an index structure and processing regime that accommodates that requirement for…
The effective potential for a dynamical Wick field (dynamical signature) induced by the quantum effects of massive fields on a topologically non-trivial $D$ dimensional background is considered. It is shown that when the radius of the…
We show that for all given $n,t,w \in \{1,2,...\}$ with $n<2^w$, an array of $n$ entries of $w$ bits each can be represented on a word RAM with a word length of $w$ bits in at most $nw+\lceil n(t/(2 w))^t\rceil$ bits of uninitialized memory…
For a fixed regular language $L$, the enumeration of $L$-infixes is the following task: we are given an input word $w = a_1 \cdots a_n$ and we must enumerate the infixes of $w$ that belong to $L$, i.e., the pairs $i \leq j$ such that $a_i…
The compact directed acyclic word graph (CDAWG) of a string $T$ of length $n$ takes space proportional just to the number $e$ of right extensions of the maximal repeats of $T$, and it is thus an appealing index for highly repetitive…
The complexity of computing the Lempel-Ziv factorization and the set of all runs (= maximal repetitions) is studied in the decision tree model of computation over ordered alphabet. It is known that both these problems can be solved by RAM…