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Open biochemical systems of interacting molecules are ubiquitous in life-related processes. However, established computational methodologies, like molecular dynamics, are still mostly constrained to closed systems and timescales too small…

Quantitative Methods · Quantitative Biology 2025-10-15 Margarita Kostré , Christof Schütte , Frank Noé , Mauricio J. del Razo

We investigate a fast-reaction--diffusion system modelling the effect of autotoxicity on plant-growth dynamics, in which the fast-reaction terms are based on the dichotomy between healthy and exposed roots depending on the toxicity. The…

Analysis of PDEs · Mathematics 2024-08-13 Jeff Morgan , Cinzia Soresina , Bao Quoc Tang , Bao-Ngoc Tran

This paper is devoted to the study of the regularity of solutions to some systems of reaction--diffusion equations, with reaction terms having a subquadratic growth. We show the global boundedness and regularity of solutions, without…

Analysis of PDEs · Mathematics 2009-01-29 M. Cristina Caputo , Alexis Vasseur

Diffusion-mediated surface phenomena are crucial for human life and industry, with examples ranging from oxygen capture by lung alveolar surface to heterogeneous catalysis, gene regulation, membrane permeation and filtration processes.…

Statistical Mechanics · Physics 2020-08-19 Denis S. Grebenkov

An encounter-based approach consists in using the boundary local time as a proxy for the number of encounters between a diffusing particle and a target to implement various surface reaction mechanisms on that target. In this paper, we…

Statistical Mechanics · Physics 2023-10-03 Ziyad Benkhadaj , Denis S. Grebenkov

Text-book concepts of diffusion- versus kinetic-control are well-defined for reaction-kinetics involving macroscopic concentrations of diffusive reactants that are adequately described by rate-constants -- the inverse of the…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Ralf Metzler , Gleb Oshanin

Reaction-diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or…

Computational Physics · Physics 2016-03-02 Fabian Spill , Pilar Guerrero , Tomas Alarcon , Philip K. Maini , Helen Byrne

The convergence to equilibrium of renormalized solutions to reaction-cross-diffusion systems in a bounded domain under no-flux boundary conditions is studied. The reactions model complex balanced chemical reaction networks coming from…

Analysis of PDEs · Mathematics 2018-08-20 Esther S. Daus , Bao Quoc Tang

This work deals with a parabolic chemotaxis model with nonlinear diffusion and nonlocal reaction source. The problem is formulated on the whole space and, depending on a specific interplay between the coefficients associated to such…

Analysis of PDEs · Mathematics 2020-04-24 Tongxing Li , Giuseppe Viglialoro

Under consideration is the hyperbolic relaxation of a semilinear reaction-diffusion equation on a bounded domain, subject to a dynamic boundary condition. We also consider the limit parabolic problem with the same dynamic boundary…

Dynamical Systems · Mathematics 2013-04-19 Ciprian G. Gal , Joseph L. Shomberg

In this paper, we investigate the asymptotic symmetry and monotonicity of positive solutions to a reaction-diffusion equation in the unit ball, utilizing techniques from elliptic geometry. Firstly, we discuss the properties of solutions in…

Analysis of PDEs · Mathematics 2024-09-10 Baiyu Liu , Wenlong Yang

We study the asymptotics of Allen-Cahn-type bistable reaction-diffusion equations which are additively perturbed by a stochastic forcing (time white noise). The conclusion is that the long time, large space behavior of the solutions is…

Analysis of PDEs · Mathematics 2019-09-13 Pierre-Louis Lions , Panagiotis E. Souganidis

In this paper we present computational techniques to investigate the solutions of two-component, nonlinear reaction-diffusion (RD) systems on arbitrary surfaces. We build on standard techniques for linear and nonlinear analysis of RD…

Computational Engineering, Finance, and Science · Computer Science 2016-05-06 Daljit Singh J. Dhillon , Michel C. Milinkovitch , Matthias Zwicker

One of the main challenges in diffusion-based molecular communication is dealing with the non-linearity of reaction-diffusion chemical equations. While numerical methods can be used to solve these equations, a change in the input signals or…

Information Theory · Computer Science 2021-06-04 Hamidreza Abin , Amin Gohari , Masoumeh Nasiri-Kenari

Q-conditional symmetries (nonclassical symmetries) for a general class of two-component reaction-diffusion systems with constant diffusivities are studied. Using the recently introduced notion of Q-conditional symmetries of the first type…

Mathematical Physics · Physics 2019-09-17 Roman Cherniha , Vasyl' Davydovych

Morphogenesis is central to biology but remains largely unexplored in chemistry. Reaction-diffusion (RD) mechanisms are, however, essential to understand how shape emerges in the living world. While numerical methods confirm the incredible…

Pattern Formation and Solitons · Physics 2014-07-17 Anton S. Zadorin , Yannick Rondelez , Jean-Christophe Galas , André Estevez-Torres

The interactions between diffusing molecules and membrane-bound receptors drive numerous cellular processes. In this work, we develop a spatial model of molecular interactions with membrane receptors by homogenizing the cell membrane and…

Quantitative Methods · Quantitative Biology 2025-01-24 Anil Cengiz , Sean D Lawley

The radiation (reaction, Robin) boundary condition for the continuum diffusion equation is widely used in chemical and biological applications to express reactive boundaries. The underlying trajectories of the diffusing particles are…

Mathematical Physics · Physics 2007-09-02 A. Singer , Z. Schuss , D. Holcman

Several problems, issued from physics, biology or the medical science, lead to parabolic equations set in two sub-domains separated by a membrane with selective permeability to specific molecules. The corresponding boundary conditions,…

Analysis of PDEs · Mathematics 2022-06-27 Giorgia Ciavolella , Benoît Perthame

Reaction-diffusion systems where transition rates exhibit quenched disorder are common in physical and chemical systems. We study pair reactions on a periodic two-dimensional lattice, including continuous deposition and spontaneous…

Disordered Systems and Neural Networks · Physics 2010-11-10 A. Wolff , I. Lohmar , J. Krug , Y. Frank , O. Biham
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