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Automatic analyses and comparisons of different stages of embryonic development largely depend on a highly accurate spatiotemporal alignment of the investigated data sets. In this contribution, we assess multiple approaches for automatic…

Image and Video Processing · Electrical Eng. & Systems 2020-07-30 Manuel Traub , Johannes Stegmaier

Accurate embryo morphology assessment is essential in assisted reproductive technology for selecting the most viable embryo. Artificial intelligence has the potential to enhance this process. However, the limited availability of embryo data…

Image and Video Processing · Electrical Eng. & Systems 2025-03-25 Oriana Presacan , Alexandru Dorobantiu , Vajira Thambawita , Michael A. Riegler , Mette H. Stensen , Mario Iliceto , Alexandru C. Aldea , Akriti Sharma

Current in vivo microscopy allows us detailed spatiotemporal imaging (3D+t) of complete organisms and offers insights into their development on the cellular level. Even though the imaging speed and quality is steadily improving,…

Image and Video Processing · Electrical Eng. & Systems 2020-01-31 Sourabh Bhide , Ralf Mikut , Maria Leptin , Johannes Stegmaier

Zebrafish embryos are a valuable model for drug discovery due to their optical transparency and genetic similarity to humans. However, current evaluations rely on manual inspection, which is costly and labor-intensive. While machine…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Sarath Sivaprasad , Hui-Po Wang , Anna-Lisa Jäckel , Jonas Baumann , Carole Baumann , Jennifer Herrmann , Mario Fritz

Automated image processing approaches are indispensable for many biomedical experiments and help to cope with the increasing amount of microscopy image data in a fast and reproducible way. Especially state-of-the-art deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2022-01-19 Dennis Eschweiler , Malte Rethwisch , Mareike Jarchow , Simon Koppers , Johannes Stegmaier

The generative AI technology offers an increasing variety of tools for generating entirely synthetic images that are increasingly indistinguishable from real ones. Unlike methods that alter portions of an image, the creation of completely…

Computer Vision and Pattern Recognition · Computer Science 2024-04-30 Manos Schinas , Symeon Papadopoulos

The generation of 3D models from real-world objects has often been accomplished through photogrammetry, i.e., by taking 2D photos from a variety of perspectives and then triangulating matched point-based features to create a textured mesh.…

Computer Vision and Pattern Recognition · Computer Science 2026-02-13 Jacob Rubinstein , Avi Donaty , Don Engel

Biomedical research increasingly relies on 3D cell culture models and AI-based analysis can potentially facilitate a detailed and accurate feature extraction on a single-cell level. However, this requires for a precise segmentation of 3D…

Image and Video Processing · Electrical Eng. & Systems 2024-08-30 Roman Bruch , Mario Vitacolonna , Elina Nürnberg , Simeon Sauer , Rüdiger Rudolf , Markus Reischl

Simulation studies are widely used to evaluate statistical methods. However, new methods are often introduced and evaluated using data-generating mechanisms (DGMs) devised by the same authors. This coupling creates misaligned incentives,…

Methodology · Statistics 2025-10-23 František Bartoš , Samuel Pawel , Björn S. Siepe

We present a novel approach for imaging the beating embryonic heart, based on combining two independent imaging channels to capture the full spatio-temporal information of the moving 3D structure. High-resolution, optically-sectioned image…

Quantitative Methods · Quantitative Biology 2020-11-04 Vikas Trivedi , Sara Madaan , Daniel B. Holland , Le A. Trinh , Scott E. Fraser , Thai V. Truong

Automated fact-checking benchmarks have largely ignored the challenge of verifying claims against real-world, high-volume structured data, instead focusing on small, curated tables. We introduce a new large-scale, multilingual dataset to…

Computation and Language · Computer Science 2026-01-27 Jacob Devasier , Akshith Putta , Qing Wang , Alankrit Moses , Chengkai Li

Increasing the visibility of nighttime hazy images is challenging because of uneven illumination from active artificial light sources and haze absorbing/scattering. The absence of large-scale benchmark datasets hampers progress in this…

Computer Vision and Pattern Recognition · Computer Science 2020-10-20 Jing Zhang , Yang Cao , Zheng-Jun Zha , Dacheng Tao

Novel view synthesis is an important problem with many applications, including AR/VR, gaming, and robotic simulations. With the recent rapid development of Neural Radiance Fields (NeRFs) and 3D Gaussian Splatting (3DGS) methods, it is…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Jonas Kulhanek , Torsten Sattler

Simulation is increasingly being used for generating large labelled datasets in many machine learning problems. Recent methods have focused on adjusting simulator parameters with the goal of maximising accuracy on a validation task, usually…

Computer Vision and Pattern Recognition · Computer Science 2020-08-20 Harkirat Singh Behl , Atılım Güneş Baydin , Ran Gal , Philip H. S. Torr , Vibhav Vineet

Foundation models such as Segment Anything Model 2 (SAM 2) exhibit strong generalization on natural images and videos but perform poorly on medical data due to differences in appearance statistics, imaging physics, and three-dimensional…

Image and Video Processing · Electrical Eng. & Systems 2026-01-21 Satrajit Chakrabarty , Sourya Sengupta , Gopal Avinash , Ravi Soni

This paper presents a comprehensive workflow for generating and validating a synthetic dataset designed for robotic surgery instrument segmentation. A 3D reconstruction of the Da Vinci robotic arms was refined and animated in Autodesk Maya…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Giorgio Chiesa , Rossella Borra , Vittorio Lauro , Sabrina De Cillis , Daniele Amparore , Cristian Fiori , Riccardo Renzulli , Marco Grangetto

Recent progress in computer vision has been dominated by deep neural networks trained over large amounts of labeled data. Collecting such datasets is however a tedious, often impossible task; hence a surge in approaches relying solely on…

Computer Vision and Pattern Recognition · Computer Science 2017-11-29 Benjamin Planche , Ziyan Wu , Kai Ma , Shanhui Sun , Stefan Kluckner , Terrence Chen , Andreas Hutter , Sergey Zakharov , Harald Kosch , Jan Ernst

Advances in 3D imaging technology in recent years have allowed for increasingly high resolution volumetric images of large specimen. The resulting datasets of hundreds of Gigabytes in size call for new scalable and memory efficient…

Computer Vision and Pattern Recognition · Computer Science 2022-05-05 Dominik Drees , Xiaoyi Jiang

The success of in vitro fertilization (IVF) at many clinics relies on the accurate morphological assessment of day 5 blastocysts, a process that is often subjective and inconsistent. While artificial intelligence can help standardize this…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Pavan Narahari , Suraj Rajendran , Lorena Bori , Jonas E. Malmsten , Qiansheng Zhan , Zev Rosenwaks , Nikica Zaninovic , Iman Hajirasouliha

One of the key impediments for developing and assessing robust medical imaging algorithms is limited access to large-scale datasets with suitable annotations. Synthetic data generated with plausible physical and biological constraints may…

Computer Vision and Pattern Recognition · Computer Science 2025-09-19 Christopher Wiedeman , Anastasiia Sarmakeeva , Elena Sizikova , Daniil Filienko , Miguel Lago , Jana G. Delfino , Aldo Badano
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