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Related papers: Chloroplast Genome Yields Unusual Seven-Cluster St…

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Previously, a seven-cluster pattern claiming to be a universal one in bacterial genomes has been reported. Keeping in mind the most popular theory of chloroplast origin, we checked whether a similar pattern is observed in chloroplast…

Genomics · Quantitative Biology 2018-02-09 Michael Sadovsky , Maria Senashova , Andrew Malyshev

We studied the structuredness ensemble of transcriptome of Siberian larch. The clusters in 64-dimensional space were identified with $K$-means technique, where the objects to be clusterized are the different fragments of the genome. A…

Other Quantitative Biology · Quantitative Biology 2018-03-12 Michael Sadovsky , Tatiana Guseva , Vladislav Birukov , Tatiana Shpagina , Victoria Fedotovskaya

In several recent papers new gene-detection algorithms were proposed for detecting protein-coding regions without requiring learning dataset of already known genes. The fact that unsupervised gene-detection is possible closely connected to…

Disordered Systems and Neural Networks · Physics 2007-05-23 A. N. Gorban , A. Yu. Zinovyev , T. G. Popova

It is shown that the rotational band structure of the cluster states in 12C and 16O can be understood in terms of the underlying discrete symmetry that characterizes the geometrical configuration of the alpha-particles, i.e. an equilateral…

Nuclear Theory · Physics 2019-10-02 Roelof Bijker

Coding information is the main source of heterogeneity (non-randomness) in the sequences of bacterial genomes. This information can be naturally modeled by analysing cluster structures in the "in-phase" triplet distributions of relatively…

Genomics · Quantitative Biology 2011-11-09 A. N. Gorban , T. G. Popova , A. Yu. Zinovyev

We applied the newly developed rose diagram overlay method to detect the layered structure of 88 nearby open clusters ($\leq$500~pc) on the three projections after the distance correction of their member stars, based on the catalog in…

Astrophysics of Galaxies · Physics 2023-05-18 Qingshun Hu , Yu Zhang , Ali Esamdin , Hong Wang , Mingfeng Qin

The structure of nanoclusters is complex to describe due to their noncrystallinity, even though bonding and packing constraints limit the local atomic arrangements to only a few types. A computational scheme is presented to extract…

Materials Science · Physics 2009-11-13 Zhu Yang , Lei-Han Tang

A general method is described for detecting and analysing galaxy systems. The multivariate geometrical structure of the sample is studied by using an extension of the method which we introduced in a previous paper. The method is based on an…

Astrophysics · Physics 2015-06-24 Armando Pisani

The Large-Scale Structure (LSS) of the Universe is a homogeneous network of galaxies separated in dense complexes, the superclusters of galaxies, and almost empty voids. The superclusters are young structures that did not have time to…

Astrophysics of Galaxies · Physics 2020-01-13 I. Santiago-Bautista , C. A. Caretta , H. Bravo-Alfaro , E. Pointecouteau , F. Madrigal

We determined the structures of silicon clusters in the 11-14 atom size range using the tight-binding molecular dynamics method. These calculations reveal that \Si{11} is an icosahedron with one missing cap, \Si{12} is a complete…

chem-ph · Physics 2016-08-31 Jun Pan , Atul Bahel , Mushti V. Ramakrishna

We studied a relations between the triplet frequency composition of mitochondria genomes, and the phylogeny of their bearers. First, the clusters in 63dimensional space were developed due to $K$-means. Second, the clade composition of those…

Genomics · Quantitative Biology 2014-05-21 Michael G. Sadovsky

Globular Clusters (GCs) have historically been subdivided in either two (disk/halo) or three (disk/inner-halo/outer-halo) groups based on their orbital, chemical and internal physical properties. The qualitative nature of this subdivision…

Astrophysics of Galaxies · Physics 2020-01-08 Mario Pasquato , Chul Chung

We investigate the internal structure of clusters of galaxies in high-resolution N-body simulations of 4 different cosmologies. There is a higher proportion of disordered clusters in critical-density than in low-density universes, although…

We use two high resolution CDM simulations to show that (i) when clusters of galaxies form the infall pattern of matter is not random but shows clear features which are correlated in time; (ii) in addition, the infall patterns are…

Astrophysics · Physics 2007-05-23 J. M. Colberg , S. D. M. White , A. Jenkins , F. R. Pearce

The analysis of the presence of substructures in 16 well-sampled clusters of galaxies suggests a stimulating hypothesis: Clusters could be classified as unimodal or bimodal, on the basis of to the sub-clump distribution in the {\em 3-D}…

Astrophysics · Physics 2009-10-22 E. Escalera , A. Biviano , M. Girardi , G. Giuricin , F. Mardirossian , A. Mazure , M. Mezzetti

We investigate a densely packed, non-random arrangement of forty-six chromosomes (46,XY) in human nuclei. Here, we model systems-level chromosomal crosstalk by unifying intrinsic parameters (chromosomal length and number of genes) across…

Genomics · Quantitative Biology 2017-11-09 Sarosh N. Fatakia , Ishita S. Mehta , Basuthkar J. Rao

The description of complex configuration is a difficult issue. We present a powerful technique for cluster identification and characterization. The scheme is designed to treat with and analyze the experimental and/or simulation data from…

Statistical Mechanics · Physics 2013-08-29 Guangcai Zhang , Aiguo Xu , Guo Lu , Zeyao Mo

We study the cluster structure of $^{12}$C and $^{13}$C in the framework of the cluster shell model. Simple relations are derived for ratios of longitudinal form factors as well as transition probabilities. It is shown that the available…

Nuclear Theory · Physics 2023-09-29 A. H. Santana-Valdés , R. Bijker

We have examined the spatial distribution of substructure in clusters of galaxies using Einstein X-ray observations. Subclusters are found to have a markedly anisotropic distribution that reflects the surrounding matter distribution on…

Astrophysics · Physics 2009-10-28 Michael J. West , Christine Jones , William Forman

Phase-change materials (PCMs) such as Ge-Sb-Te alloys are widely used in non-volatile memory applications due to their rapid and reversible switching between amorphous and crystalline states. However, their functional properties are…

Materials Science · Physics 2025-09-03 Mridul Kumar , Yevgeny Rakita
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