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Network theory provides a principled abstraction of the human brain: reducing a complex system into a simpler representation from which to investigate brain organisation. Recent advancement in the neuroimaging field are towards representing…

Neurons and Cognition · Quantitative Biology 2016-05-02 Ai Wern Chung , Emanuele Pesce , Ricardo Pio Monti , Giovanni Montana

Recent studies have shown that functional brain brainwork is dynamic even during rest. A common approach to modeling the brain network in whole brain resting-state fMRI is to compute the correlation between anatomical regions via sliding…

The heat kernel is a particular type of graph diffusion that, like the much-used personalized PageRank diffusion, is useful in identifying a community nearby a starting seed node. We present the first deterministic, local algorithm to…

Social and Information Networks · Computer Science 2016-11-16 Kyle Kloster , David F. Gleich

Autism is increasing in prevalence and is a neurodevelopmental disorder characterised by impairments in communication skills and social behaviour. Connectomes enable a systems-level representation of the brain with recent interests in…

Neurons and Cognition · Quantitative Biology 2019-09-26 Markus D. Schirmer , Ai Wern Chung

Networks constitute fundamental organizational structures across biological systems, although conventional graph-theoretic analyses capture exclusively pairwise interactions, thereby omitting the intricate higher-order relationships that…

Quantitative Methods · Quantitative Biology 2025-12-23 Sixtus Dakurah

Topological neural networks have emerged as powerful successors of graph neural networks. However, they typically involve higher-order message passing, which incurs significant computational expense. We circumvent this issue with a novel…

Machine Learning · Computer Science 2025-07-17 Maximilian Krahn , Vikas Garg

Autonomous individuals establish a structural complex system through pairwise connections and interactions. Notably, the evolution reflects the dynamic nature of each complex system since it recodes a series of temporal changes from the…

Machine Learning · Computer Science 2023-06-27 Xue Liu , Dan Sun , Wei Wei , Zhiming Zheng

Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology,…

Neurons and Cognition · Quantitative Biology 2018-04-03 Jason Kim , Jonathan M. Soffer , Ari E. Kahn , Jean M. Vettel , Fabio Pasqualetti , Danielle S. Bassett

Designing network parameters that can effectively represent complex networks is of significant importance for the analysis of time-varying complex networks. This paper introduces a novel thermodynamic framework for analyzing complex…

Quantitative Methods · Quantitative Biology 2024-09-04 Dayu Qin , Yuzhe Chen , Ercan Engin Kuruoglu

Multivariate time series forecasting poses challenges as the variables are intertwined in time and space, like in the case of traffic signals. Defining signals on graphs relaxes such complexities by representing the evolution of signals…

Machine Learning · Computer Science 2021-10-13 Semin Kwak , Nikolas Geroliminis , Pascal Frossard

The neural mechanism of memory has a very close relation with the problem of representation in artificial intelligence. In this paper a computational model was proposed to simulate the network of neurons in brain and how they process…

Neurons and Cognition · Quantitative Biology 2020-12-02 Hui Wei

One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

Neurons and Cognition · Quantitative Biology 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess

Topological data analysis is an emerging mathematical concept for characterizing shapes in multi-scale data. In this field, persistence diagrams are widely used as a descriptor of the input data, and can distinguish robust and noisy…

Machine Learning · Statistics 2017-06-13 Genki Kusano , Kenji Fukumizu , Yasuaki Hiraoka

Brain networks, graphical models such as those constructed from MRI, have been widely used in pathological prediction and analysis of brain functions. Within the complex brain system, differences in neuronal connection strengths parcellate…

Machine Learning · Computer Science 2023-05-09 Wei Dai , Hejie Cui , Xuan Kan , Ying Guo , Sanne van Rooij , Carl Yang

Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the underlying anatomical or structural network of synaptic connections. This latter is well…

Disordered Systems and Neural Networks · Physics 2021-02-11 Ali Safari , Paolo Moretti , Ibai Diez , Jesus M. Cortes , Miguel Ángel Muñoz

Predicting how the brain can be driven to specific states by means of internal or external control requires a fundamental understanding of the relationship between neural connectivity and activity. Network control theory is a powerful tool…

Neurons and Cognition · Quantitative Biology 2019-08-12 Teresa M. Karrer , Jason Z. Kim , Jennifer Stiso , Ari E. Kahn , Fabio Pasqualetti , Ute Habel , Danielle S. Bassett

In this paper, based on neural networks, we develop a data-driven model for extremely fast prediction of steady-state heat convection of a hot object with arbitrary complex geometry in a two-dimensional space. According to the governing…

Applied Physics · Physics 2021-01-12 Jiang-Zhou Peng , Xianglei Liu , Nadine Aubry , Zhihua Chen , Wei-Tao Wu

One important question in neuroscience is how global behavior in a brain network emerges from the interplay between network connectivity and the neural dynamics of individual nodes. To better understand this theoretical relationship, we…

Neurons and Cognition · Quantitative Biology 2022-09-13 Anca Radulescu , Johan Nakuci , Simone Evans , Sarah Muldoon

Large-scale white matter pathways crisscrossing the cortex create a complex pattern of connectivity that underlies human cognitive function. Generative mechanisms for this architecture have been difficult to identify in part because little…

Neurons and Cognition · Quantitative Biology 2015-06-16 Florian Klimm , Danielle S. Bassett , Jean M. Carlson , Peter J. Mucha

The understanding of neural activity patterns is fundamentally linked to an understanding of how the brain's network architecture shapes dynamical processes. Established approaches rely mostly on deviations of a given network from certain…

Neurons and Cognition · Quantitative Biology 2014-09-19 Marc-Thorsten Huett , Marcus Kaiser , Claus C. Hilgetag
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