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A simple stochastic model of a self regulating gene that displays bistable switching is analyzed. While on, a gene transcribes mRNA at a constant rate. Transcription factors can bind to the DNA and affect the gene's transcription rate.…

Statistical Mechanics · Physics 2016-03-08 Jay Newby

We describe a new complex system model of an evolving production economy. This model is the simplest we can envisage which incorporates the new observation that the rate of an economic production process depends only on the minimum of its…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 A. Ponzi , A. Yasutomi , K. Kaneko

Cascading failures in complex systems have been studied extensively using two different models: $k$-core percolation and interdependent networks. We combine the two models into a general model, solve it analytically and validate our…

Physics and Society · Physics 2017-10-04 Nagendra K. Panduranga , Jianxi Gao , Xin Yuan , H. Eugene Stanley , Shlomo Havlin

A feature common to many models of vegetation pattern formation in semi-arid ecosystems is a sequence of qualitatively different patterned states, "gaps -> labyrinth -> spots", that occurs as a parameter representing precipitation…

Pattern Formation and Solitons · Physics 2014-10-10 Karna Gowda , Hermann Riecke , Mary Silber

We explore sequential escape behaviour of coupled bistable systems under the influence of stochastic perturbations. We consider transient escapes from a marginally stable "quiescent" equilibrium to a more stable "active" equilibrium. The…

Dynamical Systems · Mathematics 2018-12-26 Peter Ashwin , Jennifer Creaser , Krasimira Tsaneva-Atanasova

Considerable evidence suggests that anticipating sudden shifts from one state to another in bistable dynamical systems is a challenging task, examples include ecosystems, financial markets, complex diseases, etc. In this paper, we…

Adaptation and Self-Organizing Systems · Physics 2016-03-23 Yogita Sharma , Partha Sharathi Dutta , A. K. Gupta

High-speed photonic switching networks can switch optical signals at the rate of several terabits per second. However, they suffer from an intrinsic crosstalk problem when two optical signals cross at the same switch element. To avoid…

Networking and Internet Architecture · Computer Science 2009-11-11 Yun Deng , Tony T. Lee

We classify the local bifurcations of one dov quantum billiards, showing that only saddle-center bifurcations can occur. We analyze the resulting planar system when there is no coupling in the superposition state. In so doing, we also…

Chaotic Dynamics · Physics 2015-06-26 Mason A. Porter , Richard L. Liboff

We prove that steady state bifurcations in finite-dimensional dynamical systems that are symmetric with respect to a monoid representation generically occur along an absolutely indecomposable subrepresentation. This is stated as a…

Dynamical Systems · Mathematics 2018-10-10 Sören Schwenker

The `random intersection graph with communities' models networks with communities, assuming an underlying bipartite structure of groups and individuals. Each group has its own internal structure described by a (small) graph, while groups…

Probability · Mathematics 2019-10-23 Remco van der Hofstad , Júlia Komjáthy , Viktória Vadon

In a standard bifurcation of a dynamical system, the stationary points (or more generally attractors) change qualitatively when varying a control parameter. Here we describe a novel unusual effect, when the change of a parameter, e.g. a…

Populations and Evolution · Quantitative Biology 2017-04-26 V. I. Yukalov , E. P. Yukalova , D. Sornette

Singular Hopf bifurcation occurs in generic families of vector-fields with two slow variables and one fast variable. Normal forms for this bifurcation depend upon several parameters, and the dynamics displayed by the normal forms is…

Dynamical Systems · Mathematics 2011-07-19 John Guckenheimer , Philipp Meerkamp

Varying one of the governing parameters of a dynamical system may lead to a critical transition, where the new stable state is undesirable. In some cases, there is only a limited range of the bifurcation parameter that corresponds to that…

Fluid Dynamics · Physics 2018-11-27 Giacomo Bonciolini , Nicolas Noiray

We study a dynamical counterpart of bifurcation to invariant torus for a system of interconnected fast phase variables and slowly varying parameters. We show that in such a system, due to the slow evolution of parameters, there arise…

Classical Analysis and ODEs · Mathematics 2015-08-28 A. M. Samoilenko , I. O. Parasyuk , B. V. Repeta

We study oscillation death (OD) in a well-known coupled-oscillator system that has been used to model cardiovascular phenomena. We derive exact analytic conditions that allow the prediction of OD through the two known bifurcation routes, in…

Adaptation and Self-Organizing Systems · Physics 2012-08-08 J. J. Suarez-Vargas , J. A. Gonzalez , A. Stefanovska , P. V. E. McClintock

Stochastic dynamics of chemical reactions in a mutually repressing two-gene circuit is numerically simulated. The circuit has a rich variety of different states when the kinetic change of DNA status is slow. The stochastic switching…

Disordered Systems and Neural Networks · Physics 2009-11-11 Tomohiro Ushikubo , Wataru Inoue , Mitsumasa Yoda , Masaki Sasai

Feedback circuits in biochemical networks which underly cellular signaling pathways are important elements in creating complex behavior. A specific aspect thereof is how stability of equilibrium points depends on model parameters. For…

Molecular Networks · Quantitative Biology 2007-11-20 Steffen Waldherr , Frank Allgower

We analyze a class of network motifs in which a short, two-node positive feed- back motif is inserted in a three-node negative feedback loop. We demonstrate that such networks can undergo a bifurcation to a state where a stable fixed point…

Molecular Networks · Quantitative Biology 2012-09-10 Weihan Li , Sandeep Krishna , Simone Pigolotti , Namiko Mitarai , Mogens H. Jensen

A family of periodic perturbations of an attracting robust heteroclinic cycle defined on the two-sphere is studied by reducing the analysis to that of a one-parameter family of maps on a circle. The set of zeros of the family forms a…

Dynamical Systems · Mathematics 2025-01-03 Isabel S. Labouriau , Alexandre A. P Rodrigues

The phenotype of any organism on earth is, in large part, the consequence of interplay between numerous gene products encoded in the genome, and such interplay between gene products affects the evolutionary fate of the genome itself through…

Molecular Networks · Quantitative Biology 2012-01-04 Pan-Jun Kim , Nathan D. Price