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Mutually repelling particles form spontaneously ordered clusters when forced into confinement. The clusters may adopt similar spatial arrangements even if the underlying particle interactions are contrastingly different. Here we demonstrate…

Soft Condensed Matter · Physics 2026-02-13 P. D. S. de Lima , R. De La Cour , K. Gaff , J. M. de Araújo , S. J. Cox , M. S. Ferreira , S. Hutzler

In automated manufacturing, robots must reliably assemble parts of various geometries and low tolerances. Ideally, they plan the required motions autonomously. This poses a substantial challenge due to high-dimensional state spaces and…

We discuss the role and merits of symmetry methods for the analysis of biological systems. In particular, we consider systems of first order ordinary differential equations and provide a comprehensive review of the geometrical foundations…

Quantitative Methods · Quantitative Biology 2022-02-11 Johannes Borgqvist , Fredrik Ohlsson , Ruth E. Baker

Many standard structural quantities, such as order parameters and correlation functions, exist for common condensed matter systems, such as spherical and rod-like particles. However, these structural quantities are often insufficient for…

Soft Condensed Matter · Physics 2012-01-18 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

As access to space and robotic autonomy capabilities move forward, there is simultaneously a growing interest in deploying large, complex space structures to provide new on-orbit capabilities. New space-borne observatories, large orbital…

Robotics · Computer Science 2021-02-23 Bryce Doerr , Keenan Albee , Monica Ekal , Richard Linares , Rodrigo Ventura

We study dense packings of a large number of congruent non-overlapping circles inside a square by looking for configurations which maximize the packing density, defined as the ratio between the area occupied by the disks and the area of the…

Soft Condensed Matter · Physics 2022-05-23 Paolo Amore , Tenoch Morales

Motivated by observations of heterogeneous domain structure on the surface of cells, we consider a minimal model to describe the dynamics of phase separation on the surface of a spherical particle. Finite-size effects on the curved particle…

Soft Condensed Matter · Physics 2016-07-13 Matthias C. Bott , Joseph M. Brader

From dumbbells to FCC crystals, we study the self-assembly pathway of amphiphatic, spherical colloidal particles as a function of the size of the hydrophobic region using molecular dynamics simulations. Specifically, we analyze how local…

Soft Condensed Matter · Physics 2015-05-13 William L. Miller , Angelo Cacciuto

The inverse problem of designing component interactions to target emergent structure is fundamental to numerous applications in biotechnology, materials science, and statistical physics. Equally important is the inverse problem of designing…

Computational Physics · Physics 2020-11-20 Carl P. Goodrich , Ella M. King , Samuel S. Schoenholz , Ekin D. Cubuk , Michael Brenner

Symmetries are known to dictate important physical properties and can be used as a design principle in particular in wave physics, including wave structures and the resulting propagation dynamics. Local symmetries, in the sense of a…

Quantum Physics · Physics 2023-03-27 P. Schmelcher

We study the symmetry properties of autonomous integrating factors from an algebraic point of view. The symmetries are delineated for the resulting integrals treated as equations and symmetries of the integrals treated as functions or…

Exactly Solvable and Integrable Systems · Physics 2008-04-24 Sibusiso Moyo , P. G. L. Leach

Symmetry is often treated in philosophy of physics as an interpretive problem. A particularly lively dispute concerns local symmetries: do they indicate surplus structure that ought to be expunged, or are they merely a harmless redundancy?…

History and Philosophy of Physics · Physics 2026-02-17 Henrique Gomes

Patchy particles have proven to be a prominent model for studying the self-assembly behavior of various systems, ranging from finite clusters to bulk crystal assemblies, and from synthetic colloidal particles to viruses. The patchy particle…

Soft Condensed Matter · Physics 2025-10-13 Gregory Snyder , Chrisy Xiyu Du

We investigate a class of "shape allophiles" that fit together like puzzle pieces as a method to access and stabilize desired structures by controlling directional entropic forces. Squares are cut into rectangular halves, which are shaped…

Soft Condensed Matter · Physics 2017-09-08 Eric S. Harper , Ryan L. Marson , Joshua A. Anderson , Greg van Anders , Sharon C. Glotzer

Wheeler emphasized the study of Superspace - the space of 3-geometries on a spatial manifold of fixed topology. This is a configuration space for GR; knowledge of configuration spaces is useful as regards dynamics and QM.In this Article I…

General Relativity and Quantum Cosmology · Physics 2015-05-15 Edward Anderson

We consider the space of all configurations of finitely many (potentially nested) circles in the plane. We prove that this space is aspherical, and compute the fundamental group of each of its connected components. It turns out these…

Algebraic Topology · Mathematics 2026-01-14 Justin Curry , Ryan C. Gelnett , Matthew C. B. Zaremsky

Self-assembly in the laboratory can now yield `information-rich' nanostructures in which each component is of a distinct type and has a defined spatial position. Ensuring the thermodynamic stability of such structures requires…

Biological Physics · Physics 2016-03-22 Stephen Whitelam

Symmetries in a network connectivity regulate how the graph's functioning organizes into clustered states. Classical methods for tracing the symmetry group of a network require very high computational costs, and therefore they are of hard,…

Adaptation and Self-Organizing Systems · Physics 2022-01-05 Pitambar Khanra , Subrata Ghosh , Karin Alfaro-Bittner , Prosenjit Kundu , Stefano Boccaletti , Chittaranjan Hens , Pinaki Pal

Perhaps the most important aspect of symmetry in physics is the idea that a state does not need to have the same symmetries as the theory that describes it. This phenomenon is known as spontaneous symmetry breaking. In these lecture notes,…

High Energy Physics - Theory · Physics 2019-12-16 Aron J. Beekman , Louk Rademaker , Jasper van Wezel

We introduce an information-theoretic framework for smooth structures on topological manifolds, replacing coordinate charts with small-scale entropy data of local probability probes. A concise set of axioms identifies admissible coordinate…

Differential Geometry · Mathematics 2026-01-21 Amandip Sangha