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Throughout the course of an epidemic, the rate at which disease spreads varies with behavioral changes, the emergence of new disease variants, and the introduction of mitigation policies. Estimating such changes in transmission rates can…

Methodology · Statistics 2022-11-29 Jenny Huang , Raphaël Morsomme , David Dunson , Jason Xu

Using the properties of random M\"{o}bius transformations, we investigate the statistical properties of the reflection coefficient in a random chain of lossy scatterers. We explicitly determine the support of the distribution and the…

Statistical Mechanics · Physics 2020-08-25 Theodoros G. Tsironis , Aris L. Moustakas

A core challenge for modern biology is how to infer the trajectories of individual cells from population-level time courses of high-dimensional gene expression data. Birth and death of cells present a particular difficulty: existing…

Quantitative Methods · Quantitative Biology 2024-03-19 Elias Ventre , Aden Forrow , Nitya Gadhiwala , Parijat Chakraborty , Omer Angel , Geoffrey Schiebinger

Reinforcement learning (RL) post-training is crucial for aligning generative models with human preferences, but its prohibitive computational cost remains a major barrier to widespread adoption. We introduce \textbf{TreeGRPO}, a novel RL…

Machine Learning · Computer Science 2025-12-10 Zheng Ding , Weirui Ye

Channel properties influence the development of wireless communication systems. Unlike wired channels that are stationary and predictable, radio channels are extremely random and dont offer easy analysis. A Radio Propagation Model (RPM),…

Networking and Internet Architecture · Computer Science 2010-02-11 M. A. Alim , M. M. Rahman , M. M. Hossain , A. Al Nahid

Prior social contagion models consider the spread of either one contagion at a time on interdependent networks or multiple contagions on single layer networks or under assumptions of competition. We propose a new threshold model for the…

Social and Information Networks · Computer Science 2018-09-13 Ho-Chun Herbert Chang , Feng Fu

Trajectories of endosomes inside living eukaryotic cells are highly heterogeneous in space and time and diffuse anomalously due to a combination of viscoelasticity, caging, aggregation and active transport. Some of the trajectories display…

Subcellular Processes · Quantitative Biology 2021-07-28 Nickolay Korabel , Daniel Han , Alessandro Taloni , Gianni Pagnini , Sergei Fedotov , Viki Allan , Thomas A. Waigh

Transfer reinforcement learning (RL) methods leverage on the experience collected on a set of source tasks to speed-up RL algorithms. A simple and effective approach is to transfer samples from source tasks and include them into the…

Artificial Intelligence · Computer Science 2011-09-02 Alessandro Lazaric , Marcello Restelli

This research presents an advanced fractional-order compartmental model designed to delve into the complexities of COVID-19 transmission dynamics, specifically accounting for the influence of environmental pathogens on disease spread. By…

Populations and Evolution · Quantitative Biology 2024-07-09 Moein Khalighi , Faïçal Ndaïrou , Leo Lahti

This work considers the problem of learning the structure of multivariate linear tree models, which include a variety of directed tree graphical models with continuous, discrete, and mixed latent variables such as linear-Gaussian models,…

Machine Learning · Computer Science 2011-11-09 Animashree Anandkumar , Kamalika Chaudhuri , Daniel Hsu , Sham M. Kakade , Le Song , Tong Zhang

Genome rearrangements are evolutionary events that shuffle genomic architectures. Most frequent genome rearrangements are reversals, translocations, fusions, and fissions. While there are some more complex genome rearrangements such as…

Genomics · Quantitative Biology 2015-04-07 Nikita Alexeev , Rustem Aidagulov , Max A. Alekseyev

Understanding the geometry of learned distributions is fundamental to improving and interpreting diffusion models, yet systematic tools for exploring their landscape remain limited. Standard latent-space interpolations fail to respect the…

Machine Learning · Statistics 2026-02-26 Elio Moreau , Florentin Coeurdoux , Grégoire Ferre , Eric Vanden-Eijnden

At the onset of the Covid-19 pandemic, a number of non-pharmaceutical interventions have been implemented in order to reduce transmission, thus leading to multiple phases of transmission. The disease reproduction number $R_t$, a way of…

Applications · Statistics 2023-05-03 Petros Barmpounakis , Nikolaos Demiris

At millimeter-wave frequencies, diffuse scattering from rough surfaces is an important propagation mechanism. Including this mechanism in radio propagation modeling tools,such as ray-tracing, is a key step towards realizing accurate…

Signal Processing · Electrical Eng. & Systems 2021-06-16 Stefanos Bakirtzis , Takahiro Hashimoto , Costas D. Sarris

The probabilistic diffusion model (DM), generating content by inferencing through a recursive chain structure, has emerged as a powerful framework for visual generation. After pre-training on enormous data, the model needs to be properly…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Tao Ren , Zishi Zhang , Jingyang Jiang , Zehao Li , Shentao Qin , Yi Zheng , Guanghao Li , Qianyou Sun , Yan Li , Jiafeng Liang , Xinping Li , Yijie Peng

From footpaths to flight routes, human mobility networks facilitate the spread of communicable diseases. Control and elimination efforts depend on characterizing these networks in terms of connections and flux rates of individuals between…

Populations and Evolution · Quantitative Biology 2016-01-29 Kyle B Gustafson , Basil S. Bayati , Philip A. Eckhoff

In spite of their huge success, transformer models remain difficult to scale in depth. In this work, we develop a unified signal propagation theory and provide formulae that govern the moments of the forward and backward signal through the…

Computation and Language · Computer Science 2024-07-19 Akhil Kedia , Mohd Abbas Zaidi , Sushil Khyalia , Jungho Jung , Harshith Goka , Haejun Lee

Lateral transfer, a process whereby species exchange evolutionary traits through non-ancestral relationships, is a frequent source of model misspecification in phylogenetic inference. Lateral transfer obscures the phylogenetic signal in the…

Applications · Statistics 2017-03-20 Luke J. Kelly , Geoff K. Nicholls

We propose Radiation Exposure Theory (RET), a mathematical framework to estimate biological damage caused by irradiation. This is an extension of LDM model which was proposed in the paper [Y. Manabe et al.: J. Phys. Soc. Jpn. 81,…

Biological Physics · Physics 2014-11-18 Yuichiro Manabe , Masako Bando

In phylogenetic studies, the evolution of molecular sequences is assumed to have taken place along the phylogeny traced by the ancestors of extant species. In the presence of lateral gene transfer (LGT), however, this may not be the case,…

Populations and Evolution · Quantitative Biology 2013-07-01 Gergely J Szöllösi , Eric Tannier , Nicolas Lartillot , Vincent Daubin