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Using different methods for laying out a graph can lead to very different visual appearances, with which the viewer perceives different information. Selecting a "good" layout method is thus important for visualizing a graph. The selection…

Social and Information Networks · Computer Science 2017-10-13 Oh-Hyun Kwon , Tarik Crnovrsanin , Kwan-Liu Ma

Graph kernels are often used in bioinformatics and network applications to measure the similarity between graphs; therefore, they may be used to construct efficient graph classifiers. Many graph kernels have been developed thus far, but to…

Quantum Physics · Physics 2022-11-01 Kaito Kishi , Takahiko Satoh , Rudy Raymond , Naoki Yamamoto , Yasubumi Sakakibara

Band structure is a cornerstone to understand electronic properties of materials. Accurate band structure calculations using a high-level quantum-chemistry theory can be computationally very expensive. It is promising to speed up such…

Quantum Physics · Physics 2021-09-13 Yi Fan , Jie Liu , Zhenyu Li , Jinlong Yang

The prop formalism allows representation of processes withstring diagrams and has been successfully applied in various areas such as quantum computing, electric circuits and control flow graphs. However, these graphical approaches suffer…

Logic in Computer Science · Computer Science 2020-07-08 Titouan Carette , Simon Perdrix

Graphs are widely used in various fields of computer science. They have also found application in unrelated areas, leading to a diverse range of problems. These problems can be modeled as relationships between entities in various contexts,…

Data Structures and Algorithms · Computer Science 2024-05-20 Davide Rucci

The characterization of quantum critical phenomena is pivotal for the understanding and harnessing of quantum many-body physics. However, their complexity makes the inference of such fundamental processes difficult. Thus, efficient and…

Quantum Physics · Physics 2022-04-27 Ricardo Puebla , Alessio Belenchia , Giulio Gasbarri , Eric Lutz , Mauro Paternostro

We develop a pairing-based graph neural network for simulating quantum many-body systems. Our architecture augments a BCS-type geminal wavefunction with a generalized pair amplitude parameterized by a graph neural network. Variational Monte…

Strongly Correlated Electrons · Physics 2023-11-22 Di Luo , David D. Dai , Liang Fu

Development of quantum architectures during the last decade has inspired hybrid classical-quantum algorithms in physics and quantum chemistry that promise simulations of fermionic systems beyond the capability of modern classical computers,…

Quantum Physics · Physics 2023-01-03 Frank T. Cerasoli , Kyle Sherbert , Jagoda Sławińska , Marco Buongiorno Nardelli

Classical computation of electronic properties in large-scale materials remains challenging. Quantum computation has the potential to offer advantages in memory footprint and computational scaling. However, general and practical quantum…

Computational Physics · Physics 2025-10-14 Yiran Bai , Feng Xiong , Xueheng Kuang

We present a novel methodology to jointly perform multi-task learning and infer intrinsic relationship among tasks by an interpretable and sparse graph. Unlike existing multi-task learning methodologies, the graph structure is not assumed…

Machine Learning · Computer Science 2020-09-15 Shujian Yu , Francesco Alesiani , Ammar Shaker , Wenzhe Yin

Grid states form a discrete set of mixed quantum states that can be described by graphs. We characterize the entanglement properties of these states and provide methods to evaluate entanglement criteria for grid states in a graphical way.…

Quantum Physics · Physics 2018-08-28 Joshua Lockhart , Otfried Gühne , Simone Severini

Graph neural networks (GNNs), which are capable of learning representations from graphical data, are naturally suitable for modeling molecular systems. This review introduces GNNs and their various applications for small organic molecules.…

Machine Learning · Computer Science 2023-10-10 Yuyang Wang , Zijie Li , Amir Barati Farimani

We present a method for electronic structure calculations that retains all of the advantages of real space and addresses the inherent inefficiency of a regular grid, which has equal precision everywhere. The computations are carried out on…

Condensed Matter · Physics 2009-10-28 Gil Zumbach , N. A. Modine , Efthimios Kaxiras

The charge transfer effect is an important component in the physical description of realistic proteins. In the hybrid quantum mechanical-molecular mechanical (QM/MM) simulations, the significant charge transfer between the QM/MM boundaries…

Chemical Physics · Physics 2019-05-03 Jiajun Yang , Fang Liu , Dongju Zhang , Likai Du

The article introduces a new method for applying Quantum Clustering to graph structures. Quantum Clustering (QC) is a novel density-based unsupervised learning method that determines cluster centers by constructing a potential function. In…

Machine Learning · Computer Science 2025-01-17 Zhe Wang , ZhiJie He , Ding Liu

Bayesian methods for learning Gaussian graphical models offer a principled framework for quantifying model uncertainty and incorporating prior knowledge. However, their scalability is constrained by the computational cost of jointly…

Methodology · Statistics 2025-08-28 Reza Mohammadi , Marit Schoonhoven , Lucas Vogels , S. Ilker Birbil

Graph states are used to represent mathematical graphs as quantum states on quantum computers. They can be formulated through stabilizer codes or directly quantum gates and quantum states. In this paper we show that a quantum graph neural…

Quantum Physics · Physics 2024-10-31 Ammar Daskin

This work studies how a suitably-designed classical system generates with a quantum-like (QL) state space mediated by a graph. The graph plays a special dual role by directing the topology of the classical network and defining a state space…

Quantum Physics · Physics 2026-03-24 Gregory D. Scholes

Graph states form a rich class of entangled states that exhibit important aspects of multi-partite entanglement. At the same time, they can be described by a number of parameters that grows only moderately with the system size. They have a…

Quantum Physics · Physics 2007-05-23 M. Hein , W. Dür , J. Eisert , R. Raussendorf , M. Van den Nest , H. -J. Briegel

Graph-based modeling plays a fundamental role in many areas of computer science. In this paper, we introduce systems of graph formulas with variables for specifying graph properties; this notion generalizes the graph formulas introduced in…

Formal Languages and Automata Theory · Computer Science 2026-01-23 Frank Drewes , Berthold Hoffmann , Mark Minas