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In this paper, we propose a parallel optimization method for electronic structure calculations based on a single orbital-updating approximation. It is shown by our numerical experiments that the method is efficient and reliable for atomic…

Numerical Analysis · Mathematics 2015-11-20 Xiaoying Dai , Zhuang Liu , Xin Zhang , Aihui Zhou

The development of a large scale quantum computer is a highly sought after goal of fundamental research and consequently a highly non-trivial problem. Scalability in quantum information processing is not just a problem of qubit…

Advances in deep learning models have revolutionized the study of biomolecule systems and their mechanisms. Graph representation learning, in particular, is important for accurately capturing the geometric information of biomolecules at…

Quantitative Methods · Quantitative Biology 2023-04-07 Xinye Xiong , Bingxin Zhou , Yu Guang Wang

The control of the quantum transport is an issue of current interest for the construction of new devices. In this work, we investigate this possibility in the realm of quantum graphs. The study allows the identification of two distinct…

Quantum Physics · Physics 2020-06-05 A. Drinko , F. M. Andrade , D. Bazeia

We develop a general formalism for representing and understanding structure in complex systems. In our view, structure is the totality of relationships among a system's components, and these relationships can be quantified using information…

Statistical Mechanics · Physics 2014-09-17 Benjamin Allen , Blake C. Stacey , Yaneer Bar-Yam

The use of topology for visualisation applications has become increasingly popular due to its ability to summarise data at a high level. Criticalities in scalar field data are used by visualisation methods such as the Reeb graph and contour…

High Energy Physics - Lattice · Physics 2017-05-31 Dean P Thomas , Rita Borgo , Simon Hands

We introduce the Hierarchical Unified Graph Representation (HUGR): a novel graph based intermediate representation for mixed quantum-classical programs. HUGR's design features high expressivity and extensibility to capture the capabilities…

Model-Based Systems Engineering aims at creating a model of a system under development, covering the complete system with a level of detail that allows to define and understand its behavior and enables to define any interface and…

Software Engineering · Computer Science 2022-01-19 Florian Schummer , Maximilian Hyba

Graph-based representations of images have recently acquired an important role for classification purposes within the context of machine learning approaches. The underlying idea is to consider that relevant information of an image is…

Machine Learning · Computer Science 2011-06-07 Alejandro Chinea , Elka Korutcheva

Execution graphs of parallel loop programs exhibit a nested, repeating structure. We show how such graphs that are the result of nested repetition can be represented by succinct parametric structures. This parametric graph template…

Data Structures and Algorithms · Computer Science 2023-07-18 Tal Ben-Nun , Lukas Gianinazzi , Torsten Hoefler , Yishai Oltchik

We analyse the problem of solving Boolean equation systems through the use of structure graphs. The latter are obtained through an elegant set of Plotkin-style deduction rules. Our main contribution is that we show that equation systems…

Logic in Computer Science · Computer Science 2025-08-08 Jeroen Keiren , Michel A. Reniers , Tim A. C. Willemse

Building large-scale quantum computers, essential to demonstrating quantum advantage, is a key challenge. Quantum Networks (QNs) can help address this challenge by enabling the construction of large, robust, and more capable quantum…

Quantum Physics · Physics 2025-03-20 Xiaojie Fan , Caitao Zhan , Himanshu Gupta , C. R. Ramakrishnan

The quantum mechanical formalism doesn't support our intuition, nor does it elucidate the key concepts that govern the behaviour of the entities that are subject to the laws of quantum physics. The arrays of complex numbers are kin to the…

Quantum Physics · Physics 2015-05-13 Bob Coecke

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

We study how to generate molecule conformations (i.e., 3D structures) from a molecular graph. Traditional methods, such as molecular dynamics, sample conformations via computationally expensive simulations. Recently, machine learning…

Machine Learning · Computer Science 2021-04-01 Minkai Xu , Shitong Luo , Yoshua Bengio , Jian Peng , Jian Tang

Quantum Graph Neural Networks (QGNNs) represent a novel fusion of quantum computing and Graph Neural Networks (GNNs), aimed at overcoming the computational and scalability challenges inherent in classical GNNs that are powerful tools for…

We show a surprising link between experimental setups to realize high-dimensional multipartite quantum states and Graph Theory. In these setups, the paths of photons are identified such that the photon-source information is never created.…

Quantum Physics · Physics 2017-12-18 Mario Krenn , Xuemei Gu , Anton Zeilinger

EDA problems are graph-structured, but not all graph-structured problems call for the same GNN computation. We argue that successful GNN-for-EDA methods are those whose propagation, aggregation, and supervision align with the native algebra…

Machine Learning · Computer Science 2026-05-12 Hyunmog Kim

E-graphs are a prominent data structure that has been increasing in popularity in recent years due to their expanding range of applications in various formal reasoning tasks. Often, they are used for equality saturation, a process of…

Programming Languages · Computer Science 2023-05-31 Eytan Singher , Shachar Itzhaky

We present a graph theory-based method to characterise flow defects and structural shifts in condensed matter. We explore the connection between dynamical properties, particularly the recently introduced concept of ''softness'', and…

Disordered Systems and Neural Networks · Physics 2024-08-13 An Wang , Gabriele C. Sosso
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