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Structural balance theory studies stability in networks. Given a $n$-vertex complete graph $G=(V,E)$ whose edges are labeled positive or negative, the graph is considered \emph{balanced} if every triangle either consists of three positive…
Network alignment is the task of establishing one-to-one correspondences between the nodes of different graphs. Although finding a plethora of applications in high-impact domains, this task is known to be NP-hard in its general form.…
A vertex $v$ of a connected graph $G$ is said to be a boundary vertex of $G$ if for some other vertex $u$ of $G$, no neighbor of $v$ is further away from $u$ than $v$. The boundary $\partial(G)$ of $G$ is the set of all of its boundary…
In this paper, we consider the graph alignment problem, which is the problem of recovering, given two graphs, a one-to-one mapping between nodes that maximizes edge overlap. This problem can be viewed as a noisy version of the well-known…
A dominating set of a graph $G=(V,E)$ is a subset of vertices $S\subseteq V$ such that every vertex $v\in V\setminus S$ has at least one neighbor in set $S$. The corresponding optimization problem is known to be NP-hard. The best known…
We study two-stage bipartite matching, in which the edges of a bipartite graph on vertices $(B_1 \cup B_2, I)$ are revealed in two batches. In stage one, a matching must be selected from among revealed edges $E \subseteq B_1 \times I$. In…
The widely studied edge modification problems ask how to minimally alter a graph to satisfy certain structural properties. In this paper, we introduce and study a new edge modification problem centered around transforming a given graph into…
In the Minimum Bisection problem, input is a graph $G$ and the goal is to partition the vertex set into two parts $A$ and $B$, such that $||A|-|B|| \le 1$ and the number $k$ of edges between $A$ and $B$ is minimized. This problem can be…
We present a quasi linear-time algorithm for Maximum Matching on distance-hereditary graphs and some of their generalizations. This improves on [Dragan, WG'97], who proposed such an algorithm for the subclass of (tent,hexahedron)-free…
In this paper, we investigate the problem of finding {\it bisections} (i.e., balanced bipartitions) in graphs. We prove the following two results for {\it all} graphs $G$: (1). $G$ has a bisection where each vertex $v$ has at least $(1/4 -…
In this paper, we study a bipartite analogue of the `random graphs evolving by degrees' process. We are given a bipartitioned set of vertices $V$ into two disjoint parts ${L}$ and ${R}$ and possibly unequal positive constants $\alpha$ and…
A matching of a graph is a subset of edges no two of which share a common vertex, and a maximum matching is a matching of maximum cardinality. In a $b$-matching every vertex $v$ has an associated bound $b_v$, and a maximum $b$-matching is a…
We consider the following graph reconstruction problem: given an unweighted connected graph $G = (V,E)$ with visible vertex set $V$ and an oracle which takes two vertices $u,v \in V$ and returns the shortest path distance between $u$ and…
In this paper we describe an algorithm that embeds a graph metric $(V,d_G)$ on an undirected weighted graph $G=(V,E)$ into a distribution of tree metrics $(T,D_T)$ such that for every pair $u,v\in V$, $d_G(u,v)\leq d_T(u,v)$ and…
We study budget constrained network upgradeable problems. We are given an undirected edge weighted graph $G=(V,E)$ where the weight an edge $e \in E$ can be upgraded for a cost $c(e)$. Given a budget $B$ for improvement, the goal is to find…
$H$-Packing is the problem of finding a maximum number of vertex-disjoint copies of $H$ in a given graph $G$. $H$-Partition is the special case of finding a set of vertex-disjoint copies that cover each vertex of $G$ exactly once. Our goal…
The component size of a graph is the maximum number of edges in any connected component of the graph. Given a graph $G$ and two integers $k$ and $c$, $(k,c)$-Decomposition is the problem of deciding whether $G$ admits an edge partition into…
We consider problems of finding a maximum size/weight $t$-matching without forbidden subgraphs in an undirected graph $G$ with the maximum degree bounded by $t+1$, where $t$ is an integer greater than $2$. Depending on the variant forbidden…
Let $G=(V, E)$ be a graph where $V$ and $E$ are the vertex and edge sets, respectively. For two disjoint subsets $A$ and $B$ of $V$, we say $A$ \emph{dominates} $B$ if every vertex of $B$ is adjacent to at least one vertex of $A$. A vertex…
De novo genome assembly focuses on finding connections between a vast amount of short sequences in order to reconstruct the original genome. The central problem of genome assembly could be described as finding a Hamiltonian path through a…