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Related papers: Probing the limits to microRNA-mediated control of…

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The observation that, through a titration mechanism, microRNAs (miRNAs) can act as mediators of effective interactions among their common targets (competing endogenous RNAs or ceRNAs) has brought forward the idea ('ceRNA hypothesis') that…

Molecular Networks · Quantitative Biology 2015-06-18 Matteo Figliuzzi , Andrea De Martino , Enzo Marinari

microRNAs (miRNAs) regulate gene expression at post-transcriptional level by repressing target RNA molecules. Competition to bind miRNAs tends in turn to correlate their targets, establishing effective RNA-RNA interactions that can…

Molecular Networks · Quantitative Biology 2020-07-01 Mattia Miotto , Enzo Marinari , Andrea De Martino

Gene expression is a noisy process and several mechanisms, both transcriptional and posttranscriptional, can stabilize protein levels in cells. Much work has focused on the role of miRNAs, showing in particular that miRNA-mediated…

Molecular Networks · Quantitative Biology 2017-03-09 Araks Martirosyan , Andrea De Martino , Andrea Pagnani , Enzo Marinari

MicroRNAs (miRNAs) are endogenous 22-nucleotide RNAs, which suppress gene expression by selectively binding to the 3-noncoding region of specific message RNAs through base-pairing. Given the diversity and abundance of miRNA targets, miRNAs…

Molecular Networks · Quantitative Biology 2007-05-23 Qinghua Cui , Zhenbao Yu , Enrico O. Purisima , Edwin Wang

Recently, microRNAs (miRNAs) have emerged as central posttranscriptional regulators of gene expression. miRNAs regulate many key biological processes, including cell growth, death, development and differentiation. This discovery is…

Molecular Networks · Quantitative Biology 2007-12-24 Edwin Wang

In the past decades microRNAs (miRNA) have much attracted the attention of researchers at the interface between life and theoretical sciences for their involvement in post-transcriptional regulation and related diseases. Thanks to the…

Molecular Networks · Quantitative Biology 2020-02-11 Elsi Ferro , Chiara Enrico Bena , Silvia Grigolon , Carla Bosia

MicroRNAs are small noncoding RNAs that regulate genes post-transciptionally by binding and degrading target eukaryotic mRNAs. We use a quantitative model to study gene regulation by inhibitory microRNAs and compare it to gene regulation by…

Molecular Networks · Quantitative Biology 2013-09-10 Javad Noorbakhsh , Alex Lang , Pankaj Mehta

MicroRNAs are endogenous non-coding RNAs which negatively regulate the expression of protein-coding genes in plants and animals. They are known to play an important role in several biological processes and, together with transcription…

Molecular Networks · Quantitative Biology 2015-03-13 Matteo Osella , Carla Bosia , Davide Cora' , Michele Caselle

MicroRNAs (miRNAs) are small RNA molecules, about 22 nucleotide long, which post-transcriptionally regulate their target messenger RNAs (mRNAs). They accomplish key roles in gene regulatory networks, ranging from signaling pathways to…

Molecular Networks · Quantitative Biology 2012-10-09 Carla Bosia , Andrea Pagnani , Riccardo Zecchina

Over the past few years, microRNAs (miRNAs) have emerged as a new prominent class of gene regulatory factors that negatively regulate expression of approximately one-third of the genes in animal genomes at post-transcriptional level.…

Genomics · Quantitative Biology 2007-05-23 Qinghua Cui , Zhenbao Yu , Youlian Pan , Enrico Purisima , Edwin Wang

Non-conding RNAs play a key role in the post-transcriptional regulation of mRNA translation and turnover in eukaryotes. miRNAs, in particular, interact with their target RNAs through protein-mediated, sequence-specific binding, giving rise…

Molecular Networks · Quantitative Biology 2018-12-27 Araks Martirosyan , Marco Del Giudice , Chiara Enrico Bena , Andrea Pagnani , Carla Bosia , Andrea De Martino

It has recently been suggested that the competition for a finite pool of microRNAs (miRNA) gives rise to effective interactions among their common targets (competing endogenous RNAs or ceRNAs) that could prove to be crucial for…

Molecular Networks · Quantitative Biology 2015-06-11 Matteo Figliuzzi , Enzo Marinari , Andrea De Martino

Recent studies reported complex post-transcriptional interplay among targets of a common pool of microRNAs, a class of small non-coding downregulators of gene expression. Behaving as microRNA-sponges, distinct RNA species may compete for…

Small, non-coding RNAs (sRNAs) play important roles as genetic regulators in prokaryotes. sRNAs act post-transcriptionally via complementary pairing with target mRNAs to regulate protein expression. We use a quantitative approach to compare…

Molecular Networks · Quantitative Biology 2008-09-04 Pankaj Mehta , Sidhartha Goyal , Ned S. Wingreen

MicroRNAs are small non-coding nucleotide sequences that regulate target protein expression at post-transcriptional levels. Biogenesis of microRNA is a highly regulated multi-step pathway. Regulation of miRNA biogenesis can be caused…

Molecular Networks · Quantitative Biology 2020-02-03 Dimpal A Nyayanit , Chetan J Gadgil

MicroRNAs (miRNAs) are a class of small noncoding RNAs that can regulate many genes by base pairing to sites in mRNAs. The functionality of miRNAs overlaps that of short interfering RNAs (siRNAs), and many features of miRNA targeting have…

Genomics · Quantitative Biology 2021-07-08 Takaya Saito , Pål Sætrom

MicroRNA-mediated regulation of gene expression is characterised by some distinctive features that set it apart from unregulated and transcription factor-regulated gene expression. Recently, a mathematical model has been proposed to…

Quantitative Methods · Quantitative Biology 2012-10-19 Indrani Bose , Sayantari Ghosh

Several studies highlighted the relevance of extrinsic noise in shaping cell decision making and differentiation in molecular networks. Experimental evidences of phenotypic differentiation are given by the presence of bimodal distributions…

Molecular Networks · Quantitative Biology 2017-04-19 Marco Del Giudice , Stefano Bo , Silvia Grigolon , Carla Bosia

Background: MicroRNAs (miRNAs) play multiple roles in tumor biology [1]. Interestingly, reports from multiple groups suggest that miRNA targets may be coupled through competitive stoichiometric sequestration [2]. Specifically, computational…

MicroRNAs (miRNAs) critically modulate stem cell properties like pluripotency, but the fundamental mechanism remains largely unknown. This study systematically analyzes multiple-omics data and builds a systems physical network including…

Molecular Networks · Quantitative Biology 2014-08-14 Anyou Wang
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