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We propose a novel group testing method, termed semi-quantitative group testing, motivated by a class of problems arising in genome screening experiments. Semi-quantitative group testing (SQGT) is a (possibly) non-binary pooling scheme that…

Information Theory · Computer Science 2015-05-28 Amin Emad , Olgica Milenkovic

We analyze a new group testing scheme, termed semi-quantitative group testing, which may be viewed as a concatenation of an adder channel and a discrete quantizer. Our focus is on non-uniform quantizers with arbitrary thresholds. For the…

Information Theory · Computer Science 2015-06-26 Amin Emad , Olgica Milenkovic

In this paper, we introduce a variation of the group testing problem capturing the idea that a positive test requires a combination of multiple ``types'' of item. Specifically, we assume that there are multiple disjoint \emph{semi-defective…

Information Theory · Computer Science 2024-05-10 Thach V. Bui , Jonathan Scarlett

Let $X$ be a set of items of size $n$ that contains some defective items, denoted by $I$, where $I \subseteq X$. In group testing, a {\it test} refers to a subset of items $Q \subset X$. The outcome of a test is $1$ if $Q$ contains at least…

Data Structures and Algorithms · Computer Science 2023-08-16 Nader H. Bshouty

The task of non-adaptive group testing is to identify up to $d$ defective items from $N$ items, where a test is positive if it contains at least one defective item, and negative otherwise. If there are $t$ tests, they can be represented as…

Information Theory · Computer Science 2020-01-07 Thach V. Bui , Minoru Kuribayashi , Tetsuya Kojima , Roghayyeh Haghvirdinezhad , Isao Echizen

A binary code is called a superimposed cover-free $(s,\ell)$-code if the code is identified by the incidence matrix of a family of finite sets in which no intersection of $\ell$ sets is covered by the union of $s$ others. A binary code is…

Information Theory · Computer Science 2016-05-19 A. G. Dyachkov , N. Polyanskii , V. Shchukin , I. Vorobyev

Efficiently counting or detecting defective items is a crucial task in various fields ranging from biological testing to quality control to streaming algorithms. The \emph{group testing estimation problem} concerns estimating the number of…

Data Structures and Algorithms · Computer Science 2023-12-08 Nader H. Bshouty , Tsun-Ming Cheung , Gergely Harcos , Hamed Hatami , Anthony Ostuni

We describe a generalization of the group testing problem termed symmetric group testing. Unlike in classical binary group testing, the roles played by the input symbols zero and one are "symmetric" while the outputs are drawn from a…

Information Theory · Computer Science 2011-08-16 Amin Emad , Jun Shen , Olgica Milenkovic

Group testing is a well-known search problem that consists in detecting of $s$ defective members of a set of $t$ samples by carrying out tests on properly chosen subsets of samples. In classical group testing the goal is to find all…

Information Theory · Computer Science 2019-05-01 Ilya Vorobyev

In group testing, the task is to identify defective items by testing groups of them together using as few tests as possible. We consider the setting where each item is defective with a constant probability $\alpha$, independent of all other…

Discrete Mathematics · Computer Science 2024-11-15 Lukas Hintze , Lena Krieg , Olga Scheftelowitsch , Haodong Zhu

Identification of up to $d$ defective items and up to $h$ inhibitors in a set of $n$ items is the main task of non-adaptive group testing with inhibitors. To efficiently reduce the cost of this Herculean task, a subset of the $n$ items is…

Information Theory · Computer Science 2019-01-10 Thach V. Bui , Minoru Kuribayashi , Tetsuya Kojima , Isao Echizen

We consider the problem of non-adaptive noiseless group testing of $N$ items of which $K$ are defective. We describe four detection algorithms: the COMP algorithm of Chan et al.; two new algorithms, DD and SCOMP, which require stronger…

Information Theory · Computer Science 2014-05-20 Matthew Aldridge , Leonardo Baldassini , Oliver Johnson

Non-adaptive group testing involves grouping arbitrary subsets of $n$ items into different pools. Each pool is then tested and defective items are identified. A fundamental question involves minimizing the number of pools required to…

Discrete Mathematics · Computer Science 2011-07-26 Mahdi Cheraghchi , Amin Karbasi , Soheil Mohajer , Venkatesh Saligrama

In this paper we study a new, generalized version of the well-known group testing problem. In the classical model of group testing we are given n objects, some of which are considered to be defective. We can test certain subsets of the…

Combinatorics · Mathematics 2012-04-09 Dániel Gerbner , Balázs Keszegh , Dömötör Pálvölgyi , Gábor Wiener

In the group testing problem, the goal is to identify a subset of defective items within a larger set of items based on tests whose outcomes indicate whether any defective item is present. This problem is relevant in areas such as medical…

Information Theory · Computer Science 2022-09-28 Nelvin Tan , Way Tan , Jonathan Scarlett

We consider the problem of non-adaptive group testing of $N$ items out of which $K$ or less items are known to be defective. We propose a testing scheme based on left-and-right-regular sparse-graph codes and a simple iterative decoder. We…

Information Theory · Computer Science 2017-01-27 Avinash Vem , Nagaraj T. Janakiraman , Krishna R. Narayanan

We study Probabilistic Group Testing of a set of N items each of which is defective with probability p. We focus on the double limit of small defect probability, p<<1, and large number of variables, N>>1, taking either p->0 after…

Data Structures and Algorithms · Computer Science 2007-11-14 Marc Mezard , Cristina Toninelli

In multistage group testing, the tests within the same stage are considered nonadaptive, while those conducted across different stages are adaptive. Specifically, when the pools within the same stage are disjoint, meaning that the entire…

Information Theory · Computer Science 2025-07-10 Guojiang Shao

In the group-testing literature, efficient algorithms have been developed to minimize the number of tests required to identify all minimal "defective" sub-groups embedded within a larger group, using deterministic group splitting with a…

Discrete Mathematics · Computer Science 2020-10-20 Laurence A. Clarfeld , Margaret J. Eppstein

In this paper, we introduce a variation of the group testing problem where each test is specified by an ordered subset of items and returns the first defective item in the specified order or returns null if there are no defectives. We refer…

Information Theory · Computer Science 2024-09-30 Waqar Mirza , Nikhil Karamchandani , Niranjan Balachandran