Related papers: Treelike quintet systems

Given a connected undirected graph $G$, a spanning tree is a subgraph $T$ of $G$ such that $V(T) = V(G)$ and $T$ is a tree. A collection of $\ell$ spanning trees $T_1,\ldots,T_\ell$ is pairwise $k$-diverse if for every $i \neq j$, $|E(T_i)…

A semi-lattice is said to be tree-like when any two of its elements are either orthogonal or comparable. Given an inverse semigroup S whose idempotent semi-lattice is tree-like, and such that all tight filters are ultra-filters, we present…

Let $T$ be a tree on $n$ vertices. We can regard the edges of $T$ as transpositions of the vertex set; their product (in any order) is a cyclic permutation. All possible cyclic permutations arise (each exactly once) if and only if the tree…

In this paper we give a sufficient and necessary condition for two rooted trees with the same plucking polynomial. Furthermore, we give a criteria for a sequence of non-negative integers to be realized as a rooted tree.

We will say that an infinite tree $T$ is almost a ray if $T$ is the union of a ray and a finite tree. Let $l$ be a non-degenerate labeling of the vertex set $V$ of almost a ray $T$ and let $d_l$ be the corresponding ultrametric on $V$. It…

In this paper, we investigate a problem concerning quartets, which are a particular type of tree on four leaves. Loosely speaking, a set of quartets is said to be `definitive' if it completely encapsulates the structure of some larger tree,…

For any integer $n$, we classify all trees whose $n$-path ideals have linear quotients.

Recently, the minimum number of reticulation events that is required to simultaneously embed a collection P of rooted binary phylogenetic trees into a so-called temporal network has been characterized in terms of cherry-picking sequences.…

Let $T$ be a rooted tree, and $V(T)$ its set of vertices. A subset $X$ of $V(T)$ is called an infima closed set of $T$ if for any two vertices $u,v\in X$, the first common ancestor of $u$ and $v$ is also in $X$. This paper determines the…

Phylogenetically decisive collections of taxon sets have the property that if trees are chosen for each of their elements, as long as these trees are compatible, the resulting supertree is unique. This means that as long as the trees…

A $k$-ended tree is a tree with at most $k$ leaves. In this note, we give a simple proof for the following theorem. Let $G$ be a connected graph and $k$ be an integer ($k\geq 2$). Let $S$ be a vertex subset of $G$ such that $\alpha_{G}(S)…

We consider the problem of constructing an an optimal-weight tree from the 3*(n choose 4) weighted quartet topologies on n objects, where optimality means that the summed weight of the embedded quartet topologiesis optimal (so it can be the…

When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…

Over some types of trees with a given number of vertices, which trees minimize or maximize the total number of subtrees or leaf containing subtrees are studied. Here are some of the main results:\ (1)\, Sharp upper bound on the total number…

Given a graph, we can form a spanning forest by first sorting the edges in some order, and then only keep edges incident to a vertex which is not incident to any previous edge. The resulting forest is dependent on the ordering of the edges,…

A tree ${\mathbb T} =\langle T\leq \rangle$ is reversible iff there is no order $\preccurlyeq \;\varsubsetneq \;\leq $ such that ${\mathbb T} \cong \langle T ,\preccurlyeq\rangle$. Using a characterization of reversibility via back and…

Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…

Let ${\cal T}=(T,w)$ be a weighted finite tree with leaves $1,..., n$.For any $I :=\{i_1,..., i_k \} \subset \{1,...,n\}$, let $D_I ({\cal T})$ be the weight of the minimal subtree of $T$ connecting $i_1,..., i_k$; the $D_{I} ({\cal T})$…

Tree convex sets refer to a collection of sets such that each set in the collection is a subtree of a tree whose nodes are the elements of these sets. They extend the concept of row convex sets each of which is an interval over a total…

Consider a set of labels $L$ and a set of trees ${\mathcal T} = \{{\mathcal T}^{(1), {\mathcal T}^{(2), ..., {\mathcal T}^{(k) \$ where each tree ${\mathcal T}^{(i)$ is distinctly leaf-labeled by some subset of $L$. One fundamental problem…